Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01728 ATGCTTCCTAGTGGGTACCTGATAAGGCCTTGTGAAGGAGGTGGTTCCCTCATCCGCATCGTTGATCATATGGATTTGGAGCCGTGGAGTATGCCAGAAGTGCTGCGTCCACTATATGAAGCATCAACAGTGCTGGCTCAAAAGACAATTATGGGGACCCTACGTCAGTCAAGGCTTGAACCCATAATCGTGACCTTCATGAAGCCTGGGTATCACGGACCAAATCACGTAACTTGGACTCATCCATACCTCACTCACGGACGAGTTTTTTTTACGACCCCAAAGTTGCCACAGAATGGTTTGCTCCCCATGCACAAGCTCTACGTGTAA 330 0.4879 MLPSGYLIRPCEGGGSLIRIVDHMDLEPWSMPEVLRPLYEASTVLAQKTIMGTLRQSRLEPIIVTFMKPGYHGPNHVTWTHPYLTHGRVFFTTPKLPQNGLLPMHKLYV* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01728 109 SUPERFAMILY Bet v1-like 1 44 - -
Rops5g01728 109 Pfam START domain 1 58 IPR002913 GO:0008289
Rops5g01728 109 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 58 IPR044830 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01728 Rops-Chr5 35845263 35845592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01728 1 58 Homeobox Transcription Factor Family AT4G32880 74.138 2.23e-25 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01728 K09338 - twl:119991331 108.997