Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01724 ATGGAGAGAGATTTCATGGGTCTACGCTCACAAGAGTCATTATCTGTGGCTAAGGAAGAGATGAACAATGATGGAAGCAAAGACTCAGGCTTCTCAAAAGGTTCAGTGGTAAAATGGTCCTTCTTGAATGAAGTCGCTGCTCATCGGCATTTGATGTCTTTCAATGTTTCTGAAAATGATAAGGCTAAAATGATGGCATCTGATTCCATCACATCTACTGGTTTTTTGGCTATCCCAAGTCTAGATGCATTTGACTCTGTTAAAAAATATGCTGGAGGTGAACTACAGAAATCTTTCAATCATGATGGACAAGGTGGCATTCATTTTTCCCTGACTCCATATCCTGTGAATCGTCCTGTGAATCAAGCAATTTCAGTTTCCATGGGAAATCCATTCCCAAAGAATCATTTTGCAACTGTTGGTCAGAATATGAATGGTGCTAATGTGAAGCAACCACTACTTGGGAAAATCCCTGTTACAACACCTCATTCAGTTGTTCCCATTGTTGGTCATGTTGCTGGATTGACTGAACCATGTAACAGTGTGAAACCATCTGCACCTGCTCCTCAACTTACCATCTTCTATGCGGGCACGGTGAATGTCTTTGATGATATCTCCCCTGAGAAGGCACAAGCTATCATGTTGTTGGCTAGGAATGGCTTATCTGCAGCTTCTAACATGGCACAGCCCAAAGTTCAGGCACCCAGCTTGAAGTTGGCAGCAGGTGATGGTGTACCTGTGAGTCAACCCATAAATATACCACCCTCCTCTGGTCTTTCAGGTCCCTTATCCGTTTCTTCACATACCAGTGCACAGTCGGGAAGTGGCTCAAGCAGCAATGGTCAACTTCCGGCAGCTAAAACATCTGGAGGTCCCATCACTCCTGTTAGCAAAGTGAAGACTCCAAAAGTAGTCAATGCAACCACCATGTTTCAATCAGCTGTACCGCAGGCTCGCAAAGCATCATTGGCTCGATTTTTGGAGAAGCGCAAGGAAAGGGTGATGAATACAGCACCATATAACCTCAACAAGAAGTTTGTGGATGTACCATTGCAGGATGCAATGGTTGCTGACATCTCTGCAACTAATGGTACCAATACTCCTTCAACCAAGCAAGGATAG 1122 0.4412 MERDFMGLRSQESLSVAKEEMNNDGSKDSGFSKGSVVKWSFLNEVAAHRHLMSFNVSENDKAKMMASDSITSTGFLAIPSLDAFDSVKKYAGGELQKSFNHDGQGGIHFSLTPYPVNRPVNQAISVSMGNPFPKNHFATVGQNMNGANVKQPLLGKIPVTTPHSVVPIVGHVAGLTEPCNSVKPSAPAPQLTIFYAGTVNVFDDISPEKAQAIMLLARNGLSAASNMAQPKVQAPSLKLAAGDGVPVSQPINIPPSSGLSGPLSVSSHTSAQSGSGSSSNGQLPAAKTSGGPITPVSKVKTPKVVNATTMFQSAVPQARKASLARFLEKRKERVMNTAPYNLNKKFVDVPLQDAMVADISATNGTNTPSTKQG* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01724 373 ProSiteProfiles Tify domain profile. 184 219 IPR010399 -
Rops5g01724 373 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 127 349 IPR040390 -
Rops5g01724 373 SMART tify_2 184 219 IPR010399 -
Rops5g01724 373 MobiDBLite consensus disorder prediction 250 287 - -
Rops5g01724 373 Pfam tify domain 187 217 IPR010399 -
Rops5g01724 373 Pfam Jas motif 316 340 IPR018467 -
Rops5g01724 373 MobiDBLite consensus disorder prediction 248 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01724 Rops-Chr5 35750234 35751355 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01724 37 345 Tify Gene Family AT3G17860 34.056 2.34e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Rops5g01724 tify 8.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01724 K13464 - gmx:100807043 395.201