Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01704 ATGGGAAGAAAGCCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGACCATGGACAATTGAGGAAGATCACAAGCTTATGAATTTCATTCTCAACAATGGCATTCACTGCTGGAGAATGGTTCCAAAGCTTGCAGGTTTGCTGAGATGTGGAAAAAGTTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGCTTCACAGAAATGGAAGAGGATCAAATTATACAACTACATTCACAACTTGGTAACAGGTGGTCTAAGATTGCTGCACATTTCCCAGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAGAATCAAGAAGAGGTTGAAGCTCCTTGGTTTGGACCCTGTGACCTTGAAGCCAATTGAGCAAAAGGAACAATCTGATGATGACAAAAATAAGACAGACATACGGCCAAATACTTCACAAGGGTCTGAAGAAGGTGTGGAGAATAAGTCCTTGGACATTCATGGAACAGAAGAAATGCCAAAAACAGAAGTGAGAAGAGAAGAAGACAAGGTGACTTTGGATGATACCACTGGCTTTTTAAACAATTATGAAATGCTATGCTCACAGTTGGACTTGGGATTATGGATGAGTCAAGAAACCAAAACCAGTACTAGTTCTTACTGTAGTTCTTCTTTCTCTATGGATGATTCTAGCAACCCTTCTGTGGGTGAATCCCCTCGCCTTAAGGAAAATTCCTTACAGCAATGGGTTGATGAATTGGATTCCATTCTCTCCTGGGATAACTTCAGTCCTCTTGAAAAAGATTTTCTCTTCTTGGAAAATAGACAATAA 822 0.4063 MGRKPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSQLGNRWSKIAAHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTLKPIEQKEQSDDDKNKTDIRPNTSQGSEEGVENKSLDIHGTEEMPKTEVRREEDKVTLDDTTGFLNNYEMLCSQLDLGLWMSQETKTSTSSYCSSSFSMDDSSNPSVGESPRLKENSLQQWVDELDSILSWDNFSPLEKDFLFLENRQ* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01704 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops5g01704 273 SMART sant 66 114 IPR001005 -
Rops5g01704 273 SMART sant 13 63 IPR001005 -
Rops5g01704 273 MobiDBLite consensus disorder prediction 157 180 - -
Rops5g01704 273 CDD SANT 16 61 IPR001005 -
Rops5g01704 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops5g01704 273 MobiDBLite consensus disorder prediction 216 239 - -
Rops5g01704 273 FunFam MYB transcription factor 11 67 - -
Rops5g01704 273 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Rops5g01704 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops5g01704 273 CDD SANT 70 110 IPR001005 -
Rops5g01704 273 Gene3D - 11 67 - -
Rops5g01704 273 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 223 - -
Rops5g01704 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops5g01704 273 Gene3D - 69 148 - -
Rops5g01704 273 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops5g01704 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops5g01704 273 MobiDBLite consensus disorder prediction 129 144 - -
Rops5g01704 273 FunFam MYB transcription factor 68 129 - -
Rops5g01704 273 MobiDBLite consensus disorder prediction 127 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01704 Rops-Chr5 35278521 35279598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01704 1 196 MYB Transcription Factor Family AT5G16600 55.665 1.94e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops5g01704 Myb_DNA-binding 5.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01704 K09422 - gmx:100819471 475.707