LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops5g01684	ATGGCTTCCCTTTTATGCTTCCTCATTCTTTTTGCTCTTTCTCTTCTTACACCAAACTTTGTTTCCTCCTCTGCAGTTCAAGACCCTGAATTGGTTGTACAAGAGGTACAAAGAAGCATCAATGCCTCTAGAAGAAACTTGGGTTATTTATCATGTGGATCTGGTAACCCCATTGATGATTGCTGGCGATGTGACCCAAATTGGGAGAACAACAGGCAAAGGCTAGCTGATTGTGCCATTGGTTTTGGCAAGGATGCCATTGGTGGAAAAAATGGTAGAATCTATGTTGTAACTGACTCTGGTGATGATGACCCAGTTAACCCAAGACCAGGAACTCTGAGGTATGCAGCTATACAAGATGAGCCATTATGGATTATCTTCAAGAGAGATATGGTGATCACATTGAAGGAAGAGCTTCTTGTGAATTCCTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCTAGTGGGGGATGCATTACCATACACTATGTGAGTAACATCATCATCCATGGTATTCACATCCATGATTGTGTTCCCACTGGGAATACAAATATAAGAGACTCCCCACACCATTCAGGCTTTTGGACTAAATCAGATGGTGATGGAGTGTCCATCTTTAATTCAAAGCATATATGGGTTGATCATTGCTCTTTATCTAACTGTCGTGATGGTCTCATTGATGCCATCCATGGATCCACAGCTATCACTATCTCCAACAACTACATGACCCATCATGACAAGGTCATGCTTTTGGGCCACAGTGACTCGTACACACAAGACAAGGACATGCAGGTCACTATTGCCTTCAATCATTTTGGAGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGACATGGGTATTTTCATGTGGTCAACAATGACTACACTCACTGGGAAATGTATGCTATTGGTGGGAGTGCTAACCCTACCATTAACAGCCAAGGAAACAGGTTTCTTGCACCAGATAATAGGTTTAGCAAGGAGGTAACCAAGCATGAGGATGCCCCACAGAATGAATGGATGTCATGGAATTGGAGATCAGAGGGAGACTTGTTCTTGAATGGAGCATTCTTCAAGCCATCTGGTGCTGGTGCTTCTTCTAACTATGCTAGGGCCTCAAGTCTTAGTGCAAGACCAGCTTCTCTTGTTGGATCCATAACTATCACTTCTGGTGCACTTAATTGCAGGAAGGGCTCCCGTTGCTAA	1215	0.4346	MASLLCFLILFALSLLTPNFVSSSAVQDPELVVQEVQRSINASRRNLGYLSCGSGNPIDDCWRCDPNWENNRQRLADCAIGFGKDAIGGKNGRIYVVTDSGDDDPVNPRPGTLRYAAIQDEPLWIIFKRDMVITLKEELLVNSFKTIDGRGASVHIASGGCITIHYVSNIIIHGIHIHDCVPTGNTNIRDSPHHSGFWTKSDGDGVSIFNSKHIWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDAPQNEWMSWNWRSEGDLFLNGAFFKPSGAGASSNYARASSLSARPASLVGSITITSGALNCRKGSRC*	405

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops5g01684	404	PANTHER	PECTATE LYASE 18-RELATED	24	402	IPR045032	GO:0030570
	Rops5g01684	404	FunFam	Pectate lyase	55	397	-	-
	Rops5g01684	404	Pfam	Pectate lyase	137	321	IPR002022	-
	Rops5g01684	404	PRINTS	Pollen allergen Amb family signature	282	301	IPR018082	-
	Rops5g01684	404	PRINTS	Pollen allergen Amb family signature	78	95	IPR018082	-
	Rops5g01684	404	PRINTS	Pollen allergen Amb family signature	346	370	IPR018082	-
	Rops5g01684	404	PRINTS	Pollen allergen Amb family signature	138	154	IPR018082	-
	Rops5g01684	404	PRINTS	Pollen allergen Amb family signature	375	398	IPR018082	-
	Rops5g01684	404	PRINTS	Pollen allergen Amb family signature	102	127	IPR018082	-
	Rops5g01684	404	PRINTS	Pollen allergen Amb family signature	202	223	IPR018082	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops5g01684	Rops-Chr5	34957980	34960562	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops5g01684	2	404	Polysaccharide Lyase	AT5G63180	76.413	0.0	635

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops5g01684	K01728		-	gmx:100794814	793.497

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