Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01642 ATGAGTTGCAATGGATGCAGGGTTTTAAGAAAAGGGTGTAGTGAAGATTGTAGTATAAGACCATGTTTGCAGTGGATCAAGAATCCTGAATCACAAGCTAATGCAACTGTGTTTCTTGCTAAGTTCTATGGTCGTGCTGGTCTTATGAATCTTATTAACGCTGGTCCTGAACACCTTCGTCCAGCGATTTTTCGTTCGTTGCTATACGAGGCATGCGGTAGAATCGTGAACCCGATTTACGGATCCGTGGGTCTATTATGGTCAGGGAGCTGGCAGCTCTGTCAAGCCGCCGTTGAAGCCGTTTTAAAAGGCGCGCCGATTACGCCGATAACTTCTGACGTGGCTGATAGGGGCCCACCACTTAAGGCCTACGACATACGCCACCTGTCCAAAGACGAGAACTCAGCCGCGTCAAATGAAACTCAGCGAGTCAAGACTCGATCCCGGTTCAATCGAACCAGAGGAGCTGTCACAAAACCGAAGGCCAGCAGGGGAATCGGGTTTTGTTCGGAGGTGAACCGGTCAGCGAGTCAAGAGTCGACCCTGAGTCACCCGTCCGAGTTGGTGGTGGAGGGAGAGAATAAAGAGAGTGAGAGTGTGGTTTCGGTGGAAACTTCGATTCTCTTCCTTGATGAACCGGAATCGAACCGGAAGTTAAATGATCGAACCGGGGAATGTGGTTATGATGTTGGTTTGGAATTGACTCTTGGGTTTGAACCGGTATCACGTGCGGATCACGCGATTCCCGTGAAGAAGAGAAAGATTGAGCTGGGACTTAAGCTTGCGGGTTGA 792 0.4962 MSCNGCRVLRKGCSEDCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSDVADRGPPLKAYDIRHLSKDENSAASNETQRVKTRSRFNRTRGAVTKPKASRGIGFCSEVNRSASQESTLSHPSELVVEGENKESESVVSVETSILFLDEPESNRKLNDRTGECGYDVGLELTLGFEPVSRADHAIPVKKRKIELGLKLAG* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01642 263 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Rops5g01642 263 PIRSF AS2 1 258 IPR017414 -
Rops5g01642 263 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Rops5g01642 263 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01642 Rops-Chr5 34237564 34238947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01642 1 255 AS2 family AT3G02550 62.357 8.61e-103 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops5g01642 LOB 7.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01642 - - gmx:100814175 376.326