Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01628 ATGGTCAATTTCCAAATAGGCGACAAGGTTGAGGTTTGCAGCGACGAAGAGGGGTTTTTAGGTTCTTACTATGAAGCCACCATTGTGCAACACCTTGACAATGGTTGTTACGTTGTACGTTACAAGAACCTTTTGGAAGTGGATGGGTCTAAACCTCTCACTGAGACCCTTTATCCGGAGGAGCTTCGTCCCCTTCCACCACGTGTGCGTACTTCCGAGTTTAAGCTTTACCAGTATGTCGATGCTTTTGACAATGATGGTTGGTGGATTGGGAAGATCACTAGGATAATGGGCTCCCGTTACCGTGTATATTTCATCACTGCAAATGAGGAGAAAGAATATCATTCCTCTTGCATCAGGCTTCACCATGAGTTGATTTACGGGGAATGGTATTTTTTTGATTGA 405 0.442 MVNFQIGDKVEVCSDEEGFLGSYYEATIVQHLDNGCYVVRYKNLLEVDGSKPLTETLYPEELRPLPPRVRTSEFKLYQYVDAFDNDGWWIGKITRIMGSRYRVYFITANEEKEYHSSCIRLHHELIYGEWYFFD* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01628 134 CDD Tudor_Agenet_AtDUF_rpt1_3 4 67 - -
Rops5g01628 134 SMART agenet_At_2 72 127 IPR014002 -
Rops5g01628 134 SMART agenet_At_2 2 70 IPR014002 -
Rops5g01628 134 CDD Tudor_Agenet_AtDUF_rpt2_4 80 121 - -
Rops5g01628 134 Pfam Agenet domain 7 67 IPR008395 -
Rops5g01628 134 Gene3D - 1 74 - -
Rops5g01628 134 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 3 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01628 Rops-Chr5 33909413 33909817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01628 14 134 PHD Transcription Factor Family AT5G58610 28.477 2.34e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01628 - - gmx:106794115 155.606