Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01616 ATGTTCCCTTACAGTTCCACCCCTTACCATTCCTTCCTTTCATCTTCTTCTTCATTCCCTCCTTTTCATTTCCTCAATCCTGAAAATGCTTCTTCAAGTAACACCCTTCTTCATGATCCACTTTCTGTTCCTTACATACCAACTCATCATAACACTTCAATCCAAGAAACACTGAACAATTTAGCAGTTGCTGCAGATAACTGTGCTGCTGCTACTGCTTCAGCTTCAATGCCAAAACAAGACATAAGTGGTGCTCACTATGGCATTTCCCGTTTGCTCACCAAGAAACCTGCTAAGAAAGATAGGCACAGCAAGATTTACACCTCTCAGGGTTTGAGAGACCGCAGGGTGAGGTTGTCCATTGATATCGCTCGCAAGTTCTTTGATCTTCAAGACATGTTAGGGTTTGACAAAGCAAGCAACACCCTTGAGTGGCTCTTCACAAAGTCCAAGAAAGCAATTAAGGAACTAGCTAGGAGCAAAAACAGTAACAGTGAAGGTACCAAGAGTTTCTCTTCATCTTCTGAATGTGAAGACTGTGAAGTGGTTTCGGGGATCAAGCAGCAGCAACTCATTGGTACTGAAACTCCAAACCTACAAAAAGACCAGTCATTTGGTGGTCGTGGTGATGCTGCAAAAGAGAGGAAGATGAAAAGGGCACAGAAGGAACCTGCTTGTGTTCGTGCAAAGATGAAGGAGTCAAGGGAAAAAGCAAGAGCAAGAGCAAGGGAAAGGACTAGTAACAAGATGTGCAACAACAACAACAACACTGGGAGGGTGCAGCAAGAGTTGAAGAAAAAGTTCCCTGCAAATGAAAACACTCAAATTCTTCAACCTGAGGACTGTGCAAGATCACCTAAGCTGGTTCACCCTCATCATAACCTTATGGGTAGTGAAGCACCAAGAGATGACTTCAATGTTATTGAGGAATCCATAGTCATCAAGAGAAAGTTGAAGCCATCTTTGATGTCTTCTCATCATCATCATCACCAAAACTTTATGATCCCTAAGGAAGCAAGTTTCAACAACAACAGTGACTACCACTCCTTCCCCAATTGGGATGCTAATAATGGTTCCACAGGCCGCTCCAACTTCTGTGCAATAGCAAGCATGAATCTATCTACAGGGCTTCAAATCTTTGGGAAGTCTTGGGAGGAGTGCACCAATCCACGTCTACACTAG 1182 0.434 MFPYSSTPYHSFLSSSSSFPPFHFLNPENASSSNTLLHDPLSVPYIPTHHNTSIQETLNNLAVAADNCAAATASASMPKQDISGAHYGISRLLTKKPAKKDRHSKIYTSQGLRDRRVRLSIDIARKFFDLQDMLGFDKASNTLEWLFTKSKKAIKELARSKNSNSEGTKSFSSSSECEDCEVVSGIKQQQLIGTETPNLQKDQSFGGRGDAAKERKMKRAQKEPACVRAKMKESREKARARARERTSNKMCNNNNNTGRVQQELKKKFPANENTQILQPEDCARSPKLVHPHHNLMGSEAPRDDFNVIEESIVIKRKLKPSLMSSHHHHHQNFMIPKEASFNNNSDYHSFPNWDANNGSTGRSNFCAIASMNLSTGLQIFGKSWEECTNPRLH* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01616 393 MobiDBLite consensus disorder prediction 198 234 - -
Rops5g01616 393 Pfam TCP family transcription factor 98 252 IPR017887 -
Rops5g01616 393 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 72 342 IPR005333 GO:0003700
Rops5g01616 393 ProSiteProfiles R domain profile. 232 249 IPR017888 -
Rops5g01616 393 MobiDBLite consensus disorder prediction 207 234 - -
Rops5g01616 393 ProSiteProfiles TCP domain profile. 99 157 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01616 Rops-Chr5 33598106 33599395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01616 36 257 TCP Transcription Factor Family AT1G67260 37.931 1.21e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops5g01616 TCP 1.3e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01616 - - gmx:100801549 431.409