Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01611 ATGGATGGCTCAACGGTTGGTGATACAAAAATTGCTAGTATTGAAATGCATGTATCTGGGCCCTCCATTAATGCCAACGTAGAGCAATCTGAACAGACGCAAATGGATAAGATAAAGGACGTGGAGACACACTTGTATCAGATAAAGGAAGTATTGATCCCCAACTTAGAATCATCTATTCAGGGTTTAAGGTCACTTCTAGAGAATCTCACCTCCACTGTTGAGGGGCTGGCTTATCGAATACAAAATATAGAGCGTAATTGCAATGTTATTGTCGACAAAGTTGTCCTCTCTGACCGTGTCAAACATGAACCAACACTTGAAATGGAACAAAGCCCTGTTGTGATGCAACCGTTGACCGCCCTGCATGGTGCTTTTCGTCCAGCATCTACTCCAACATTGAAGATGAAATCAACTCCAGCTTACAAGACCAAGGCAAATGCTACGACAAAGGAACCCATTCAAACACATTTCATGCCGTTTGTCGATCTAATATCTGACGAGGATGATGGCAAGATGAAAAGTGTAACCCATGTCCAACCAAGTGATCTGCTCACAAAATGTGCATTGACAACCAACTACCGAGCACAAACCCAGGTCACAAAGGGATCCCAATCACCGATAACAAAGCCTGTGGTTCGAAGAATGTTACCAGCATCCAAAGCTAGACCCACCAAAATACCCAAATTAGAACCCCATGTCGACCACACAACTGACCAACAACGTAAGATATTGAAGACAAATTTTCCCATAACACCTGACTTGGGACTTAGTCAAGAACAAGTGCAAGTCTTTGCCTATGTATTCCATCCAGACCGCAATCCTGGGGAGTTCATCTTTAAGGTTGGAGATATTGTGGGAACCCGTCATGATTTTCAGTGCCTCAGTCCAGGCAGGGTAGTTGATGAACACATTTATGTCCCCATCGAGGAGTTTGGCGGCCACTGGTATCTTATGATCATCTCCATCCAAGATAGGTCAATCTACCATGTGGACTGCTACTATGAGCCCCAAAATGCTGTACACAGACATGACAACATAAGAAATCTGAGTGAAGTAGTAGCTCAAATAGCCATGTCAAGTAATTATCCAGATAACTATCTTGATGGAGTGTTGGACACTATGAATTGGGAAATTACTGAAATGGGACCCTTTATAAATTATTACTGAAGAGTACCTTGCTTAAGAAGGAGAAGCAGTGGTTTTTCCAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGGAGAAGAAACATAATCAAATGCTTCGCACCCAATTGCAACTCCTCAGGGAAGGCAGTCAAGTCTTGGCTGGTGCTTCTCAGGTTGTTGAGAAGCAGTTCAGAAGCATGAATTTAAATTATGGGGCCAACAGCAGTGATGGGATCCATGATGCATAA 1398 0.4306 MDGSTVGDTKIASIEMHVSGPSINANVEQSEQTQMDKIKDVETHLYQIKEVLIPNLESSIQGLRSLLENLTSTVEGLAYRIQNIERNCNVIVDKVVLSDRVKHEPTLEMEQSPVVMQPLTALHGAFRPASTPTLKMKSTPAYKTKANATTKEPIQTHFMPFVDLISDEDDGKMKSVTHVQPSDLLTKCALTTNYRAQTQVTKGSQSPITKPVVRRMLPASKARPTKIPKLEPHVDHTTDQQRKILKTNFPITPDLGLSQEQVQVFAYVFHPDRNPGEFIFKVGDIVGTRHDFQCLSPGRVVDEHIYVPIEEFGGHWYLMIISIQDRSIYHVDCYYEPQNAVHRHDNIRNLSEVVAQIAMSSNYPDNYLDGVLDTMNWEITEMGPFINYY*RVPCLRRRSSGFSRGVSKYRGVAREKKHNQMLRTQLQLLREGSQVLAGASQVVEKQFRSMNLNYGANSSDGIHDA* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01611 464 Coils Coil 67 87 - -
Rops5g01611 464 SUPERFAMILY Cysteine proteinases 258 342 IPR038765 -
Rops5g01611 464 Gene3D Adenoviral Proteinase; Chain A 301 399 - -
Rops5g01611 464 Pfam Ulp1 protease family, C-terminal catalytic domain 303 360 IPR003653 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01611 Rops-Chr5 33439866 33445146 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01611 305 413 AP2-EREBP Transcription Factor Family AT3G54320 33.028 1.16e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01611 - K09285 lja:Lj0g3v0303209.1 106.301