Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01608 ATGAATAACAACATGGACTTGTCGTTAACACCTGGCTTCAAGTTCTCACCAGATGATGTTGAGTTGATGCGCTGTTTGCAACTTCAAAACGCTGGGGATCCTTTCATTCATGATTGGATTCAAGAAGTTGATGTTTACGAAAATCATCCTCAAGTGCTCTATAACACCTTTAAACGTCCAGGAGAGCACTATTCATACTTTTTTACATCGAGAAATCTAATATATCCAAATGGAAGTCGTGCCAATCGTACTGTTAGAGATGGTTTTGGTTTCTGGAGGGTTACTGGAAAAAAACTTGAAATAGGGAGTGGTGGCTCTATCATTGGATTCAAGACGCCTTTGGCATTTTACATAGGAACATCGACAGCTAAAGATAAAACTAACTGGCGTATGCATGAATTTACCTGTTCAAGCACAACTCCTGACAAGTCGCATGATTATGTTCTTTGTAAAATTAATTACAAGAACAAACCTGACAAGAAAAGTGAAGAAGCTGAAGAGGGGAATGAGTGCAGAGAGGAAAATCAAGATATTGAAGGAATGATGATGAATTCTACTCAACAAAATCAAAACTTTCAGACTCAACAGATGCATTCAAGCTCATTTCCTCCTGTTTCACCTCCTTCACTGGTGATGTCTTCTCTAGTTGAGATGGAAGGCTACAATGATAATGCTATACGTTGGAACTATCGACGGGACAACTTTGATGACTTTGAACTTTGGGGACACCAATTTTTTTCCAATCAAGCCTCACCAAATGAGCCACGTCCTTGA 774 0.3928 MNNNMDLSLTPGFKFSPDDVELMRCLQLQNAGDPFIHDWIQEVDVYENHPQVLYNTFKRPGEHYSYFFTSRNLIYPNGSRANRTVRDGFGFWRVTGKKLEIGSGGSIIGFKTPLAFYIGTSTAKDKTNWRMHEFTCSSTTPDKSHDYVLCKINYKNKPDKKSEEAEEGNECREENQDIEGMMMNSTQQNQNFQTQQMHSSSFPPVSPPSLVMSSLVEMEGYNDNAIRWNYRRDNFDDFELWGHQFFSNQASPNEPRP* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01608 257 Gene3D NAC domain 18 160 IPR036093 GO:0003677|GO:0006355
Rops5g01608 257 PANTHER NAC TRANSCRIPTION FACTOR 56 9 188 - -
Rops5g01608 257 Pfam No apical meristem (NAM) protein 11 135 IPR003441 GO:0003677|GO:0006355
Rops5g01608 257 SUPERFAMILY NAC domain 6 155 IPR036093 GO:0003677|GO:0006355
Rops5g01608 257 ProSiteProfiles NAC domain profile. 9 155 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01608 Rops-Chr5 33389284 33391691 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01608 7 161 NAC Transcription Factor Family AT1G52890 41.875 3.39e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops5g01608 NAM 2.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01608 - - cam:101501775 135.961