Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01607 ATGTTTACTTCCTCTTGTTCTTCATCAACAATGAACAACAACATGAACGCTAGTGTTGAGTTACCACCTGGTTACAAGTTCTCACCAGATGATGTTGAGTTGACCGAGTCCTATTTGCAACCTAAAAACGCTGGGGGTCCTATCCTTCATGATCGGTTTCAAGAAGTTGATGTTTACAAATATCATCCTGAAGACCTCTATAATACCTTTAAACGTCCAGGAGAGCACTATGCATACGTTTTTACATCGAGTAATCTAATATATCCAAATGGATATCGTGCCAATCGTAAAGTTGAAGGTTTTGGTTTCTGGAGGGTTACTGGTAAAGATTTTCCAATAATGAGTGGTGGCTCTCAGATTGGATTCAAGAAGCCTTTGGCATTTTACATAGGAACACCGAAAGATAAAACAAAAACTAACTGGCTTATGCATGAATTTACCTGCTCAAGCACAACTCCTGACAAGAACAAACGTGACAAGAAAAGTGAAGATGCTGAAGAGGAGAATGAGTGCAGAGAGGAAAATCAAGATGAAGAAATGATGAATTCTATTCAACAAAATCAAAACTTTCAGACTCAACATCTGCAAAGTCCTTCTATTCCTATTTCAGAGAGTGCTATGAATCCAACCTCTCTTCCACCTCCTCCACTGCCGATGTCTTATCCAGTTGAGATGGAAGACTACAATGATAATGCTATGTTTTCCAACTATCGACGGGACAACTTTGATGACGTTGAACTTTGGGGAGACCAATTATTTCCCAGTCAACCCCCACCAAATGAGCCACGTCCTTGA 795 0.4 MFTSSCSSSTMNNNMNASVELPPGYKFSPDDVELTESYLQPKNAGGPILHDRFQEVDVYKYHPEDLYNTFKRPGEHYAYVFTSSNLIYPNGYRANRKVEGFGFWRVTGKDFPIMSGGSQIGFKKPLAFYIGTPKDKTKTNWLMHEFTCSSTTPDKNKRDKKSEDAEEENECREENQDEEMMNSIQQNQNFQTQHLQSPSIPISESAMNPTSLPPPPLPMSYPVEMEDYNDNAMFSNYRRDNFDDVELWGDQLFPSQPPPNEPRP* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01607 264 SUPERFAMILY NAC domain 12 154 IPR036093 GO:0003677|GO:0006355
Rops5g01607 264 Gene3D NAC domain 31 190 IPR036093 GO:0003677|GO:0006355
Rops5g01607 264 PANTHER NAC TRANSCRIPTION FACTOR 56 20 180 - -
Rops5g01607 264 ProSiteProfiles NAC domain profile. 21 176 IPR003441 GO:0003677|GO:0006355
Rops5g01607 264 Pfam No apical meristem (NAM) protein 22 147 IPR003441 GO:0003677|GO:0006355
Rops5g01607 264 MobiDBLite consensus disorder prediction 148 224 - -
Rops5g01607 264 MobiDBLite consensus disorder prediction 180 207 - -
Rops5g01607 264 MobiDBLite consensus disorder prediction 151 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01607 Rops-Chr5 33337131 33338957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01607 16 176 NAC Transcription Factor Family AT1G77450 39.130 2.97e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops5g01607 NAM 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01607 - - cam:101501775 150.984