Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01589 ATGACTGGTCCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGGAAGTGTGTGAGTGGTTGTGTTTTTGCACCTTACTTTTGTCATGATCAATTATATACCCATTTCCCAGCCATTCATAAGGTCTTTGGTTCAAGCAATGTCTCAAAGCTCCTTGCCCATCTCCCTGTGAGTGATCGTTATGAAGCTGCACTTGCTATCTCATATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGTTGTGTTGCCCATATTATTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAGCTAGTTTATCTCAGGGAACAAGCAACTCAGAGATGTTTTAATGTCTCAGCTGCTGAAAACCCTAATGAGAATATTATTTTTCAGTAG 387 0.4134 MTGPGSPCGACKFLRRKCVSGCVFAPYFCHDQLYTHFPAIHKVFGSSNVSKLLAHLPVSDRYEAALAISYEAQARLQDPIYGCVAHIIALQQQVVNLQAQLVYLREQATQRCFNVSAAENPNENIIFQ* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01589 128 Coils Coil 87 107 - -
Rops5g01589 128 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Rops5g01589 128 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Rops5g01589 128 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01589 Rops-Chr5 33135430 33135934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01589 1 122 AS2 family AT2G42440 70.161 2.69e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops5g01589 LOB 1.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01589 K13945 K13944 gmx:100816960 208.379