Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01580 ATGGAAGAAGCACGACAACAACAACAACAACAACGTCTTCCTCATCAATCCCACGCTTGTGAAGTTCAAGGTATGGAACGTGTGGTGGCAACGGTGAGTGGCTACAATGGCTCGGAACGATTCAATCTCATCAAGCTGATTTCGCATTCTGGTGCCAATTACGTTGGGGCCATGTCGAAATCAATAACACACCTTGTGTGTTGGAAGTTTGAAGGAAAGAAATATGATATCGCACGAAAGTTCAGAATACTTATAGTCAACCATCGATGGGTTGAAGATTGCATCAAAGAAGGAAGGCGTGTCCCTGAAGATTCTTATACGTTGCAAAGTGGACATGAAGTGGGGCCATTGTTACTGGAAGTTCCAGTCACTGTTCAAGCAGGTAGCTTGACAAAGAATAAAGTGGTTAGTGACAGGTTATGTGATATTGGGTCTGAAAGGCAAAATACCGACTTCAGTTCTGGACCTTATTCTGTTTTGGAAGATTCTTGTTTATTGAAAAAGTATGGGGAGTCAAGTTCGTATTCATCTAGACTGTTAAGGAAAGGAAAAAGAAATATTTGCAGTGGTAGTGGAGTCAGTACTGAGGCTGGACATTCTCGTAGAGGAAGAAGGCGTGTGAATAATGTTGTTGATGAAGTGGTGTTGGATCCTATATTTTTGGATCCAGAAGACCACCTTTGCAGAATGGATAGACTACACACTGATGCTGCAGCTACCTCTAGCCTTTCTGGTGATGTCAATTTTAACAATATCCAAGAAGATAGTGAAGGAGTCAATGGTGGATTATATAATCAAAGTAGAACTATCAACGGAGGTTCAGATGGCACTGACCAGATCACAGATTCAAATCATATATCTACTCTTAGAAATTCAACTTTGCTTATAGAAGATCCTCTACCTGTGGCTCAAACATCAATAGATTTATGTTCCAGTCCTGAAAAATTCACAGACGGTGATCAGGTTGATAATCTTGCTGGCTTACCTATTTCGAATGAGTTGTCATGTGTTATATGTTTCACAGATTTCAGTTCAACAAGGGGGATTTTGCCATGTGGACATCGGTTTTGTTTTCAATGCATCCAGAGTTGGGTTGATCATAGGGCTTCAATGGGAAAAATATCAACCTGCCCTTTGTGCAAGGCAAGTTTTGTGATGATCAAGAAAGTTGAGCATGCAGCCACTACTGATCAAAAAGTATACTCCCAGACAATCCCATGTGACAATTCAGCCTCAGATATTTTTATCCCCGTGGATCAAGAATTACTAGATAATAGCTTTGAGTCCTCACAGGCTGGCGCTTGTGTTGTTTGCCGTGGTCGTGAGCCTGAGGATCTCCTTGAGAATTGCGATGTTTGTCGTACTCGAAGAATCCATTCTTACTGCATGGACCCTCCTTTACGACCTTGGACATGCAGTCACTGCAAGGAACTTCGGATGCTTTATCGTATTCACTCATATTAG 1464 0.4167 MEEARQQQQQQRLPHQSHACEVQGMERVVATVSGYNGSERFNLIKLISHSGANYVGAMSKSITHLVCWKFEGKKYDIARKFRILIVNHRWVEDCIKEGRRVPEDSYTLQSGHEVGPLLLEVPVTVQAGSLTKNKVVSDRLCDIGSERQNTDFSSGPYSVLEDSCLLKKYGESSSYSSRLLRKGKRNICSGSGVSTEAGHSRRGRRRVNNVVDEVVLDPIFLDPEDHLCRMDRLHTDAAATSSLSGDVNFNNIQEDSEGVNGGLYNQSRTINGGSDGTDQITDSNHISTLRNSTLLIEDPLPVAQTSIDLCSSPEKFTDGDQVDNLAGLPISNELSCVICFTDFSSTRGILPCGHRFCFQCIQSWVDHRASMGKISTCPLCKASFVMIKKVEHAATTDQKVYSQTIPCDNSASDIFIPVDQELLDNSFESSQAGACVVCRGREPEDLLENCDVCRTRRIHSYCMDPPLRPWTCSHCKELRMLYRIHSY* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01580 487 ProSitePatterns Zinc finger RING-type signature. 352 361 IPR017907 -
Rops5g01580 487 SMART ring_2 336 380 IPR001841 -
Rops5g01580 487 PANTHER F5A8.9 PROTEIN 162 483 - -
Rops5g01580 487 SMART BRCT_7 22 98 IPR001357 -
Rops5g01580 487 ProSiteProfiles BRCT domain profile. 22 108 IPR001357 -
Rops5g01580 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 406 IPR013083 -
Rops5g01580 487 SUPERFAMILY BRCT domain 22 109 IPR036420 -
Rops5g01580 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 484 IPR013083 -
Rops5g01580 487 SUPERFAMILY FYVE/PHD zinc finger 428 478 IPR011011 -
Rops5g01580 487 Gene3D BRCT domain 21 113 IPR036420 -
Rops5g01580 487 Pfam twin BRCT domain 28 90 IPR001357 -
Rops5g01580 487 ProSiteProfiles Zinc finger RING-type profile. 336 381 IPR001841 -
Rops5g01580 487 Pfam Zinc finger, C3HC4 type (RING finger) 336 380 IPR018957 GO:0046872
Rops5g01580 487 SUPERFAMILY RING/U-box 329 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01580 Rops-Chr5 32980373 32986547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01580 62 114 Core DNA Replication Machinery Family AT4G02110 51.852 8.03e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01580 - - gmx:100815034 703.36