Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01571 ATGCTGAAAGAAGGCACAAACAATGGAGGTGGCAGCTTCAACAACTGGTCTCGCCTATGTGACACTTGTCGCACTGCACCATGCACCATTTACTGCCATGCTGACTCAGCATACCTGTGCTCAAGCTGTGACTCTAGCATCCATGCAGCTAACCGTGTTGCTTCAAGGCATGAACGTGTGTTGGTTTGTGAGGCTTGTGAACGTGCTCCTGCAGCATTTCATTGCAAAGCTGATGCTGCTTCTCTTTGTTCTTCTTGTGATGCTGATATTCACTCTGCTAACCCATTGGCAAGTCGTCACCACCGTGTGCGTGTTCTACCTTTCTCTGGGTGTCTACAAGATCATAAATTTGTAGTAAATAATGGGTGTGAAGTAGAAGAAGAAGAGGTTGTTGATGAAGAGGAATATGAGGCAGAAGCAGAAGCAGCTTCATGGTGGTTGTCAAATCCTGTGAAGAACAATGAGGAAGAGAATCAGAATCAGAGTTTTTGGTTTGGTGGGGTGATTGATGAGTATCTGGATCTTGTGGATTTTAATTCATGTGGTGATAACAACAACAACAACCAGTTCAGTAATGTTCACTGTGATGATCAACATAATTACAGCACTCTCCCTAGGAACTATGCAGTGTTTCCTGTTCATTGTGGAGGAGAAGCACTAGCTTATGTTCAACAACTATCACAACAATTTCAACCGGGTTTGGATTTTGACTCCTCAAAAGCTGAGTTCAGTTATGATGGTTCTCTTAGTCAAAGTGTTTCAGTTTCATCCGTGGAAGTTGGTGTTGTACCAGAATCAACAATAAGTGATATCTCAATTTCCCATTCAAAATCACCGATAGGGACAAGTGACCTATTTCCTCCCATGCCAATGCCTTCACATCTTACTCCAATGGACAGGGAAGCCAAAGTCCTAAGATATAAAGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCTAGAATAAAAGGTCGATTTGCAAAGAGAACTGATGAAGAAGCTGAAGTGGACCAAATGCTCTACACAATACTGACGACAGAAGCTGGATGTGGCTTTGTTCCCTCTTTCTAA 1110 0.4261 MLKEGTNNGGGSFNNWSRLCDTCRTAPCTIYCHADSAYLCSSCDSSIHAANRVASRHERVLVCEACERAPAAFHCKADAASLCSSCDADIHSANPLASRHHRVRVLPFSGCLQDHKFVVNNGCEVEEEEVVDEEEYEAEAEAASWWLSNPVKNNEEENQNQSFWFGGVIDEYLDLVDFNSCGDNNNNNQFSNVHCDDQHNYSTLPRNYAVFPVHCGGEALAYVQQLSQQFQPGLDFDSSKAEFSYDGSLSQSVSVSSVEVGVVPESTISDISISHSKSPIGTSDLFPPMPMPSHLTPMDREAKVLRYKEKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDEEAEVDQMLYTILTTEAGCGFVPSF* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01571 369 ProSiteProfiles CCT domain profile. 300 342 IPR010402 GO:0005515
Rops5g01571 369 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 20 352 IPR045281 GO:0009909
Rops5g01571 369 CDD Bbox1_BBX-like 19 62 - -
Rops5g01571 369 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Rops5g01571 369 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Rops5g01571 369 Pfam CCT motif 300 342 IPR010402 GO:0005515
Rops5g01571 369 Pfam B-box zinc finger 61 103 IPR000315 GO:0008270
Rops5g01571 369 Pfam B-box zinc finger 18 60 IPR000315 GO:0008270
Rops5g01571 369 CDD Bbox1_BBX-like 62 105 - -
Rops5g01571 369 SMART bboxneu5 15 62 IPR000315 GO:0008270
Rops5g01571 369 SMART bboxneu5 63 105 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01571 Rops-Chr5 32749492 32750934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01571 1 369 C2C2-CO-like Transcription Factor Family AT3G02380 51.724 7.27e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Rops5g01571 zf-B_box 6.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01571 K12135 - gmx:100782635 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01571 5 32749492 32750934 Rops8g00334 8 6404588 6407173 PCT