Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01568 ATGTCTCATTTCACTCTCAACAAAACCAAACCAAAAATCTCACCACCTTCTCCATCTTTCACCCTGCTGGATTTCAATCCACACCACTCCTTTTCTATTGATCAAGCTAGTCTAACAGATATTATCAAAGATAAAGACGTCGAGGGTCTTAAGAAACATGGTGGGGTTGAAGGGTTGGCTGCAGCACTGGAAACCAACGTTGAGTTTGGTATCAAAGGTGATGATGCTCAAGACATTGCACGTAGACAACAAGTGTTTGGTTCCAACACCACCAACAAACCACCTTCCAAAGGCTTCTTTCATTTTGTAATGGAAGCCTTTAAGGATGTCACAATCCTCATCCTTTTGGTTTGTGCTGCTCTTTCACTAGGCTTTGGCATCAAGGAGCATGGACTCAAAGAAGGTTGGTATGATGGTGGCAGCATTTTTGTTGCTGTGTTTATTGTCATTTCATTGTCTTCAATAAGCAACTTCAGGCAGAATAAACAATTCGACAAGTTATCACAAATGAGCAATGATATACAAATTGATGTTATGAGAAGTGGGCGCCGCCAAAAGATCTCAATCTTTGAGATTGTGGTGGGTGATGTTGTTTGGTTGAAGATTGGAGATCAAGTCCCAGCTGATGGATTATTCATAGAAGGACATTCATTGAGAGTTGATGAATCAAGCATGACAGGGGAGAGTGATCACGTGGAGATTAATAAAAACCATCAACCTTTCTTGTTATCAGGTACAAAGGTGGTTGATGGGTATGCTAAGATGCTTGTCACCTGA 777 0.4106 MSHFTLNKTKPKISPPSPSFTLLDFNPHHSFSIDQASLTDIIKDKDVEGLKKHGGVEGLAAALETNVEFGIKGDDAQDIARRQQVFGSNTTNKPPSKGFFHFVMEAFKDVTILILLVCAALSLGFGIKEHGLKEGWYDGGSIFVAVFIVISLSSISNFRQNKQFDKLSQMSNDIQIDVMRSGRRQKISIFEIVVGDVVWLKIGDQVPADGLFIEGHSLRVDESSMTGESDHVEINKNHQPFLLSGTKVVDGYAKMLVT* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01568 258 SUPERFAMILY Calcium ATPase, transduction domain A 175 258 IPR008250 -
Rops5g01568 258 Gene3D - 73 258 - -
Rops5g01568 258 PANTHER CATION TRANSPORTING ATPASE 30 258 - -
Rops5g01568 258 Pfam E1-E2 ATPase 175 258 - -
Rops5g01568 258 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 191 IPR023298 -
Rops5g01568 258 Gene3D - 105 160 - -
Rops5g01568 258 SMART Cation_ATPase_N_a_2 52 127 IPR004014 -
Rops5g01568 258 Pfam Cation transporter/ATPase, N-terminus 53 122 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01568 Rops-Chr5 32593464 32594240 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01568 32 257 Primary Pumps ATPases AT3G63380 66.814 5.87e-97 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01568 K01537 - gmx:100793918 411.764