Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01565 ATGCTTGTCACCTCAGTTGGTATGAACACAACATGGGGCCAAATGATTAGTTCAATAAGCCGTGATATTGATGAGCAAACTCCTTTGCAAGCAAGGCTTAACAAGCTTACATCATCCATTGGGAAGGTTGGTTTGGCTGTGGCTTTTCTTGTTCTTCTTGTTTTGTTGGTTCGTTACTTCACAGGGAACACAAAGGATGAGAATGGTGTTAGGGAGTACAATGGAAGCAAGACGAAGTTTGATGATATAATGAATGCAGTTGTGGGAATTGTTGCTGATGCAGTTACCATTGTTGTTGTTGCAATCCCTGAGGGTCTGCCACTGGCTGTGACTTTGACACTGGCTTATTCAATGAAGAAAATGATGGCCGATCAAGCTTTGGTGAGAAAGCTCTCTGCATGTGAGACAATGGGGTCTGCTACAACTATTTGTACTGATAAAACAGGCACACTCACACTGAACCAGATGAAGGTGACAAAGTTTTGGCTTGGCCTAGAACCTGTGGCAGAACAAACCTACTCATCAATTGCTCCATATGTTCTTCAATTGATAAAGGAAGGAGTGGCTCTCAACACAACTGGTGGTGTGCACAAGTCTAAATCAGGTACTGAATTTGAGTTTTCAGGTAGTCCAACAGAAAAAGCAATCCTATCATGGGCTGTCTTGGAACTGAACATGGAGATGGAGCACTTGACCAAAAGCTGTTCCATCATTCATGTTGAGACCTTCAACTCAAAGAAGAAAAGAAGTGGGGTCTTGTTGAGAAGGAAGGCAGACGACACAGTCAATGCACATTGGAAAGGAGCAGCAGAGATGGTACTAAAAATGTGTTCAAGATACTATGATGCTTCTGGCCTTGTGAAAGATCTTGACAATGAAACCATGTTGAAGTTTGAACACATTATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGTATTGCCTTGGCACATGTAGAAGTATCAGAAGAAGAGCTTGGAGATGAAGGAGGCAACAAAATGGTGAAAGACAAGGGTCTAACACTTCTAGGACTTGTTGGTATCAAGGATCCATGTCGTCCAGGGGTGAAGACAGCTGTGGAAGCATGCCAACATGCTGGTGTGAATGTCAAAATGATCACAGGTGACAATGTTTTCACTGCAAAAGCTATAGCAACTGAATGTGGCATACTTAAGCCTAATCAGGACACAAATGGAGCAGTGGTTGAAGGAGAGGAATTTCGCAACTACACACATGAAGAGAGATTGGAGAAAGTTGACAAAATCTGTGTGATGGCAAGATCCTCTCCTTTTGATAAACTACTAATGGTTCAATGCCTTAAACAGAAAGGCCATGTAGTTGCTGTCACCGGGGATGGAACAAATGATGCTCCAGCACTCAAGGAAGCTGATATTGGACTTTCTATGGGAATTCAAGGAACTGAAGTTGCCAAAGAGAGTTCAGATATTGTAATATTGGATGACAATTTTGCATCTGTGGTCACAGTAGTAAGGTGGGGAAGATGTGTTTATAACAACATCCAGAAGTTTATTCAATTTCAATTGACAGTGAATGTTGCTGCACTTGCAATCAACTTTGTGGCAGCAGTGTCAGCAGGTGAAGTGCCACTTACAGCAGTGCAATTATTATGGGTGAACTTGATCATGGACACATTGGGTGCTTTGGCTCTTGCAACTGAGAAGCCTACCATGGAGTTGATGGACAACCCACCAGTTGGTAGAACCAAACCTCTCATCACTAACATCATGTGGAGGAATCTGTTAGCTCAAGCTTTGTACCAGATAGCAATTTTGTTGACCCTTCAATTCAAAGGTGAGTCTATCTTTGGTGTGACATCAGGGGTGAATGACACATTGATTTTCAACACATTCGTTCTTTGCCAAGTGTTCAATGAGTTCAATGCAAGGAAGATGGAGAAGAAGAATGTTTTCAAAGGCATACATAGGAGCAAGTTGTTTCTGGGAATTATTGGGATTACAATAGTACTTCAGGTGGTCATGGTTGAGTTTCTCAAGAAGTTTGCCGATACAGAGAGGTTGAATTGGGGTCAATGGGCTATTTGCATTGGTCTTGCTGCAGTTTCATGGCCAATTGGTTGGGTTGTGAAGTTGATACCTGTCTCAGATGAACCATTATTCAATTTTTTGAGTAAGATGAAGAGAAGACGAAGATGA 2172 0.4208 MLVTSVGMNTTWGQMISSISRDIDEQTPLQARLNKLTSSIGKVGLAVAFLVLLVLLVRYFTGNTKDENGVREYNGSKTKFDDIMNAVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQALVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGLEPVAEQTYSSIAPYVLQLIKEGVALNTTGGVHKSKSGTEFEFSGSPTEKAILSWAVLELNMEMEHLTKSCSIIHVETFNSKKKRSGVLLRRKADDTVNAHWKGAAEMVLKMCSRYYDASGLVKDLDNETMLKFEHIIQGMAASSLRCIALAHVEVSEEELGDEGGNKMVKDKGLTLLGLVGIKDPCRPGVKTAVEACQHAGVNVKMITGDNVFTAKAIATECGILKPNQDTNGAVVEGEEFRNYTHEERLEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVVRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTMELMDNPPVGRTKPLITNIMWRNLLAQALYQIAILLTLQFKGESIFGVTSGVNDTLIFNTFVLCQVFNEFNARKMEKKNVFKGIHRSKLFLGIIGITIVLQVVMVEFLKKFADTERLNWGQWAICIGLAAVSWPIGWVVKLIPVSDEPLFNFLSKMKRRRR* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01565 723 Gene3D - 1 174 - -
Rops5g01565 723 PRINTS P-type cation-transporting ATPase superfamily signature 473 485 - -
Rops5g01565 723 PRINTS P-type cation-transporting ATPase superfamily signature 343 354 - -
Rops5g01565 723 PRINTS P-type cation-transporting ATPase superfamily signature 449 468 - -
Rops5g01565 723 PRINTS P-type cation-transporting ATPase superfamily signature 144 158 - -
Rops5g01565 723 PRINTS P-type cation-transporting ATPase superfamily signature 365 375 - -
Rops5g01565 723 SFLD Haloacid Dehalogenase 126 502 - -
Rops5g01565 723 Pfam E1-E2 ATPase 2 122 - -
Rops5g01565 723 SUPERFAMILY HAD-like 142 554 IPR036412 -
Rops5g01565 723 FunFam Calcium-transporting ATPase 154 350 - -
Rops5g01565 723 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 151 347 IPR023299 GO:0000166
Rops5g01565 723 ProSitePatterns E1-E2 ATPases phosphorylation site. 146 152 IPR018303 -
Rops5g01565 723 Gene3D - 350 466 IPR023214 -
Rops5g01565 723 Pfam haloacid dehalogenase-like hydrolase 141 463 - -
Rops5g01565 723 Gene3D - 194 349 IPR023299 GO:0000166
Rops5g01565 723 FunFam Calcium-transporting ATPase 343 494 - -
Rops5g01565 723 PANTHER CATION TRANSPORTING ATPASE 1 707 - -
Rops5g01565 723 SFLD p-type atpase 126 502 IPR044492 -
Rops5g01565 723 PRINTS H+-transporting ATPase (proton pump) signature 298 316 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops5g01565 723 PRINTS H+-transporting ATPase (proton pump) signature 481 506 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops5g01565 723 PRINTS H+-transporting ATPase (proton pump) signature 449 465 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops5g01565 723 NCBIfam HAD-IC family P-type ATPase 422 530 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops5g01565 723 NCBIfam HAD-IC family P-type ATPase 87 166 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops5g01565 723 NCBIfam calcium-translocating P-type ATPase, PMCA-type 1 706 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Rops5g01565 723 Pfam Cation transporting ATPase, C-terminus 534 704 IPR006068 -
Rops5g01565 723 Gene3D - 467 708 - -
Rops5g01565 723 FunFam Calcium-transporting ATPase 466 708 - -
Rops5g01565 723 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 706 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01565 Rops-Chr5 32562617 32564788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01565 1 720 Primary Pumps ATPases AT3G22910 73.167 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01565 K01537 - gmx:100793918 1261.13