Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01558 ATGCAGGCCAGGGAGGTTACAGGACTCAATTATTTGCTCCCTTCAATCCCATCTCCAAATCCAGCTAACTACACCATGATTCAAAACAATATTCCCACATTTCAATATCAAAGATTCTCTAACACATTATTTGGTTACCAAAACCCCCCACCTCCTCAAATCCCTGACTTTAGTCCTCAATCATCATGTATCAGCAGCAATTCCACTTCTGATGAAGCAGATGAGCAGCAACTGAGTCTCATCAATGAAAGGAAACATAGAAGGATGATATCAAATCGAGAATCTGCACGTAGATCACGCATGAGGAAGCAGAAACACCTTGATGAGCTTTGGTCACAAGTTGTTTGGCTCAGGAATGAGAATCACCAACTAATAGACAAGCTGAACCATGTTTCAGAAAGTCATGATCAAGTTCTTCAAGAGAATGCTCAGCTGAAAGAAGAAGCTTCAGAACTTCGCCAAATGCTGAGAGACATGCAGATACATAGTCCTTGCCCTTCTTTTAGCCCCTTGGAAGATGTTCCTTGCAGCTCAGCTTATCTCAGATCTGATTCTTCAAACCAATCCATTTCAAGTTCCATGGACCTGCTTGGCTAA 597 0.4204 MQAREVTGLNYLLPSIPSPNPANYTMIQNNIPTFQYQRFSNTLFGYQNPPPPQIPDFSPQSSCISSNSTSDEADEQQLSLINERKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLIDKLNHVSESHDQVLQENAQLKEEASELRQMLRDMQIHSPCPSFSPLEDVPCSSAYLRSDSSNQSISSSMDLLG* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01558 198 Coils Coil 128 162 - -
Rops5g01558 198 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 10 168 IPR044521 -
Rops5g01558 198 CDD bZIP_plant_GBF1 85 136 IPR045314 GO:0003700|GO:0006355
Rops5g01558 198 Gene3D - 82 138 - -
Rops5g01558 198 FunFam BZIP transcription factor 82 133 - -
Rops5g01558 198 Pfam bZIP transcription factor 84 142 IPR004827 GO:0003700|GO:0006355
Rops5g01558 198 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 87 102 IPR004827 GO:0003700|GO:0006355
Rops5g01558 198 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 82 145 IPR004827 GO:0003700|GO:0006355
Rops5g01558 198 SMART brlzneu 80 144 IPR004827 GO:0003700|GO:0006355
Rops5g01558 198 SUPERFAMILY Leucine zipper domain 84 134 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01558 Rops-Chr5 32479364 32480159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01558 10 168 bZIP Transcription Factor Family AT3G30530 61.963 2.13e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops5g01558 bZIP_1 3.2e-14 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01558 - - aprc:113867865 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01558 5 32479364 32480159 Rops8g00337 8 6472772 6473630 PCT