Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01557 ATGTCTCGTTATTCCTCCAATCCCTTCACAACCACTCACTCCGATTCCGATTCCGATTCCGATTCCGACTCACTGAATTGCTTCATCACCGATCTCTTCGAAACTCGCTCTTCTCATCCTTCTCCCCCTTGTTCCTGCCATGACATCAACATAAACCCCTTCTCCGACGTCGTTTGCGATCTTCATCGTCACCGCCAACGAGGGTTAGAATTAGGGTTAGGGTTTGGGGATGAAATTGAACAAACCCAACAAAATCACGATAACGACGATGATGGGGTTTTCGATTTTCATTCGCGTGGGCTTAGGGTTGTTGGGTTCGGATCCGATTCGGATTCAAGTAGCGAGCTTGCTGAGAATGATGATTTGGGTGTTCAATTGTGTTGGGATAATCTCTGTTTGGAGGATAATAGGACCCTGAATGAATGGGAAGAGGTTGAAGAGAGGGTGAATGAGAGAGAAGACTCATCAAGTTTGGTTCTTGATGAGGTTCAGGTTGATGGGCAATCAATGGGTTCTGGTTTTGAAGAAGAGGAGCCTGGTGAAGAGTCGTTAAGGTATTTGGAATGGGAAATCCTATTAGCTGTTAACAATTTGGAGAGGAATGTTAGCTTGGAACATGATGATGATCATGTTGGTGATTCATATTTAGCAATTCATGATGGTTTTATATCCGCAGCTGAATATGATGTTCTTTTTGGGCAGTTTGTGGAGAGTGAGAGTGTTTTGAAAGGTAGTCCTCCAGCGGCAAAGAGTTTCGTGGAGAATCTCCCTTTGGTGAAATTGAATGAGGAGGAATTAAGAGGGAAGGATTTGGTGTGTGCTGTTTGTAAAGATGAAATCATGTTGGAGGAGAAGGTGAGGAGGCTTCCTTGCTCCCATTGTTACCATGGAGACTGCATTTTGCCATGGTTGAGTATTCGCAACACATGCCCTGTGTGTCGGTTCGAGTTGCCCACGGATGATCCTGATTATGAGCAGAGCAAGGTCCATAGGGCTGCACATGGTCTGTTGGAGCTTGCAGCACAGATGCAGTTTTGA 1038 0.4528 MSRYSSNPFTTTHSDSDSDSDSDSLNCFITDLFETRSSHPSPPCSCHDININPFSDVVCDLHRHRQRGLELGLGFGDEIEQTQQNHDNDDDGVFDFHSRGLRVVGFGSDSDSSSELAENDDLGVQLCWDNLCLEDNRTLNEWEEVEERVNEREDSSSLVLDEVQVDGQSMGSGFEEEEPGEESLRYLEWEILLAVNNLERNVSLEHDDDHVGDSYLAIHDGFISAAEYDVLFGQFVESESVLKGSPPAAKSFVENLPLVKLNEEELRGKDLVCAVCKDEIMLEEKVRRLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDPDYEQSKVHRAAHGLLELAAQMQF* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01557 345 SMART ring_2 273 313 IPR001841 -
Rops5g01557 345 FunFam E3 ubiquitin-protein ligase RING1-like 234 320 - -
Rops5g01557 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 320 IPR013083 -
Rops5g01557 345 ProSiteProfiles Zinc finger RING-type profile. 273 314 IPR001841 -
Rops5g01557 345 MobiDBLite consensus disorder prediction 1 22 - -
Rops5g01557 345 Pfam Ring finger domain 273 314 IPR001841 -
Rops5g01557 345 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 148 318 - -
Rops5g01557 345 SUPERFAMILY RING/U-box 260 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01557 Rops-Chr5 32457119 32458574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01557 189 328 C3H Transcription Factor Family AT5G15820 50.000 4.52e-42 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01557 - - gmx:100812037 402.134