Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01532 ATGGGTTCTGTTTGTTGTTGTTTGAGTTTTGACGATTTTGAAGATTATGTAAATCCAAATAGTCCTGTATATAGGAACTGCATGTGTCTCAGTTGCTTGATGCAGAACCTTTTGCATCTGTATGCATCAATATTCCGTAGAGGGGAAGCACATTCAATACCTTCATCTGTTCAGGGAACAGGATCTATGACTTCTGCAGCATCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTACCTTATGATGTAGAACCCAGATATTTCCGTTCACAACGTGATGGACTTGTTTCAAGGCGTGACAAGAGTTCTAGTCATTCTGAGGAAACAGAACCTCTAAGAAGTGATGTTGATGCAGATCCAGAATCTTTAAATTCAGGAGACAAATGGAATGAATGTGCCTGTGAAGATGGATCAAAGGAATACCGTTCTAAGTCCTCGCTAAGACTTTCATCAGCAAAATACACAACTGGAGTTGGACTTGTTTATGCATCATCTGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTAAAGAGAATCCAAAGATAATGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATTTATGAATGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGAAAGGTGATGGTATTCGATGAAACGACTTTCTCTTGA 687 0.3988 MGSVCCCLSFDDFEDYVNPNSPVYRNCMCLSCLMQNLLHLYASIFRRGEAHSIPSSVQGTGSMTSAASLDNSLSDMYRSPPRPLPYDVEPRYFRSQRDGLVSRRDKSSSHSEETEPLRSDVDADPESLNSGDKWNECACEDGSKEYRSKSSLRLSSAKYTTGVGLVYASSEEEDVCPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETTFS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01532 228 MobiDBLite consensus disorder prediction 97 129 - -
Rops5g01532 228 ProSiteProfiles Zinc finger RING-type profile. 176 216 IPR001841 -
Rops5g01532 228 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 224 - -
Rops5g01532 228 Pfam RING-H2 zinc finger domain 171 216 IPR024766 GO:0008270
Rops5g01532 228 CDD RING-H2_AIRP1-like 172 220 - -
Rops5g01532 228 SMART ring_2 176 216 IPR001841 -
Rops5g01532 228 FunFam E3 ubiquitin-protein ligase At3g02290-like 153 223 - -
Rops5g01532 228 MobiDBLite consensus disorder prediction 97 130 - -
Rops5g01532 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 223 IPR013083 -
Rops5g01532 228 SUPERFAMILY RING/U-box 171 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01532 Rops-Chr5 31960617 31968180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01532 1 225 C3H Transcription Factor Family AT5G15790 59.307 2.11e-91 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01532 - - gmx:100777068 427.943