Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops5g01532 | ATGGGTTCTGTTTGTTGTTGTTTGAGTTTTGACGATTTTGAAGATTATGTAAATCCAAATAGTCCTGTATATAGGAACTGCATGTGTCTCAGTTGCTTGATGCAGAACCTTTTGCATCTGTATGCATCAATATTCCGTAGAGGGGAAGCACATTCAATACCTTCATCTGTTCAGGGAACAGGATCTATGACTTCTGCAGCATCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTACCTTATGATGTAGAACCCAGATATTTCCGTTCACAACGTGATGGACTTGTTTCAAGGCGTGACAAGAGTTCTAGTCATTCTGAGGAAACAGAACCTCTAAGAAGTGATGTTGATGCAGATCCAGAATCTTTAAATTCAGGAGACAAATGGAATGAATGTGCCTGTGAAGATGGATCAAAGGAATACCGTTCTAAGTCCTCGCTAAGACTTTCATCAGCAAAATACACAACTGGAGTTGGACTTGTTTATGCATCATCTGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTAAAGAGAATCCAAAGATAATGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATTTATGAATGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGAAAGGTGATGGTATTCGATGAAACGACTTTCTCTTGA | 687 | 0.3988 | MGSVCCCLSFDDFEDYVNPNSPVYRNCMCLSCLMQNLLHLYASIFRRGEAHSIPSSVQGTGSMTSAASLDNSLSDMYRSPPRPLPYDVEPRYFRSQRDGLVSRRDKSSSHSEETEPLRSDVDADPESLNSGDKWNECACEDGSKEYRSKSSLRLSSAKYTTGVGLVYASSEEEDVCPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETTFS* | 229 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops5g01532 | 228 | MobiDBLite | consensus disorder prediction | 97 | 129 | - | - | |
Rops5g01532 | 228 | ProSiteProfiles | Zinc finger RING-type profile. | 176 | 216 | IPR001841 | - | |
Rops5g01532 | 228 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 60 | 224 | - | - | |
Rops5g01532 | 228 | Pfam | RING-H2 zinc finger domain | 171 | 216 | IPR024766 | GO:0008270 | |
Rops5g01532 | 228 | CDD | RING-H2_AIRP1-like | 172 | 220 | - | - | |
Rops5g01532 | 228 | SMART | ring_2 | 176 | 216 | IPR001841 | - | |
Rops5g01532 | 228 | FunFam | E3 ubiquitin-protein ligase At3g02290-like | 153 | 223 | - | - | |
Rops5g01532 | 228 | MobiDBLite | consensus disorder prediction | 97 | 130 | - | - | |
Rops5g01532 | 228 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 223 | IPR013083 | - | |
Rops5g01532 | 228 | SUPERFAMILY | RING/U-box | 171 | 223 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops5g01532 | Rops-Chr5 | 31960617 | 31968180 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops5g01532 | 1 | 225 | C3H Transcription Factor Family | AT5G15790 | 59.307 | 2.11e-91 | 266 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops5g01532 | - | - | gmx:100777068 | 427.943 |