Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01517 ATGATTCAGTCCTTCCTCAAACCGTGTCCATGCATGCTGCTTTTGTTCTTGCTCTCTTTCACTTGCTACCCTTCAACAGAAGCTTATGATCCACTTGACCCAAATGGAAATATCACAATCAAATGGGATATTATAAGCTGGACAGCTGATGGTTATGTTGCTGTTGTTACAATGAATAACTTCCAACAATATCGTCATATCTCAGCACCGGGATGGTCACTAGGATGGACATGGGCAAAGAAGGAGGTAATATGGAGCATGATGGGAGGGCAAGCCACTGACCAAGGGGATTGTTCTAAATTTAAGGGAACCATCCCACATTGCTGTAAAAAGAACCCAACAATTGTTGATTTACTTCCTGGAACACCTTACAATCAACAAATTGCAAATTGCTGCAAAGGTGGTGTACTCAGATCATGGGCACAGGATCCAGCCAATGCAGTTGCATCTTTCCAAGTTAGTGTGGGTAGAGGTGGTACCACTAACAGAACTGTCAAAGTGCCAAAAAACTTCACCTTGAAAGCACCTGGACCAGGTTATACATGTGGGCCAGCAAAAATTGTGAAACCAACTCAATTCATTCAACCAGACAAAAGGAGAGTGACCCAAGCACTCATGACATGGAATGTGACATGCACATATTCACAATTCCTAGCTCAGAAAACTCCCACTTGCTGTGTCTCCCTCTCATCTTTCTATAATGATACTGTTGTACCATGCCCAACATGTTCGTGTGGCTGCCAGGGAAACTCATCTCAATCAGGGAACTGTGTAGATCCAGATTCACCACCTTTGGCGTCAGTTGTTTCCGACCCCGGAAAGAATAGTATTACACCTTTGGTACGATGTACTAGTCATATGTGCCCAATCCGAGTTCACTGGCACGTTAAGCTTAACTACAAGGAGTACTGGCGTGTGAAGGTCACTATTACTAACTTCAATTACAGGATGAATTATTCTGATTGGAATTTGGTTGTTCAACACCCAAACTTGGACAATCTGACTCAACTTTTCAGTTTCAATTACGAAGGATTAACTCCCTACGGATCAATAAATGATACAGCAATGCTTTGGGGAATTAAGTTCTACAATGATTTACTCATGCAAGCTGGCCCTCTTGGTAATGTACAATCAGAGCTACTTTTCAGAAAGGATAAATCAACTTTTACTTTTGATAAGGGTTGGGCTTTTCCTCGGAGGATCTATTTCAATGGTGACAACTGTGTAATGCCACCACCTGATGCTTATCCATGGCTACCTAATGCTGGTTCCAAACAAGAGGTTTCCCTGCTTGCTTTGATGATAACTTCCTTGGTGGCCTTGTTTGGAATTCATACCAAGCAGGAGTATGACATCCAGTGA 1362 0.4251 MIQSFLKPCPCMLLLFLLSFTCYPSTEAYDPLDPNGNITIKWDIISWTADGYVAVVTMNNFQQYRHISAPGWSLGWTWAKKEVIWSMMGGQATDQGDCSKFKGTIPHCCKKNPTIVDLLPGTPYNQQIANCCKGGVLRSWAQDPANAVASFQVSVGRGGTTNRTVKVPKNFTLKAPGPGYTCGPAKIVKPTQFIQPDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTVVPCPTCSCGCQGNSSQSGNCVDPDSPPLASVVSDPGKNSITPLVRCTSHMCPIRVHWHVKLNYKEYWRVKVTITNFNYRMNYSDWNLVVQHPNLDNLTQLFSFNYEGLTPYGSINDTAMLWGIKFYNDLLMQAGPLGNVQSELLFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAGSKQEVSLLALMITSLVALFGIHTKQEYDIQ* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01517 453 Pfam COBRA-like protein 52 215 IPR006918 GO:0010215|GO:0016020
Rops5g01517 453 PIRSF COBRA 2 448 IPR006918 GO:0010215|GO:0016020
Rops5g01517 453 PANTHER PROTEIN COBRA 16 437 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01517 Rops-Chr5 31446595 31450432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01517 14 442 COBRA Gene Family AT3G02210 77.726 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01517 - - gmx:100804568 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00449 8 8509280 8512932 Rops5g01517 5 31446595 31450432 PCT