Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01515 ATGGCCTCTTCCGAGATTAACTGGGATAGGCTAGATAAAACAAAGTTCTATGTTGTAGGAGCTGGACTCTTTACCGGTATTACCGTGGCACTTTACCCGGTCTCTGTCGTGAAGACCAGGCTGCAGGTTGCTTCGAAGGAAACCTCGGAGAAAAATGCATTATCTGTTGTGAAAGGATTACTTAAGACAGATGGCATCCCTGGTTTGTATAAAGGGTTTGGCACGGTCATCACTGGCGCAATTCCTGCAAGGATCATATTCCTCACTGCATTAGAGACCACAAAGGTGGCTTCCTTCAAGATGATTGAGCCTTTTAAACTGTCTGAAACTAGCCAGGCTGCCATAGCAAATGGAATTGCAGGCATGGCATCGTCGCTTTTGTCGCAAGCTGTGTTTGTTCCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATACTCAGGCCACGCCCAGTATAGTGGGGGTTTGGATGTTGCTCGTAAGGTGTTAAGGTCTGAGGGCTTCAGGGGATTATACAGAGGGTTTGGTCTATCTGTTATGACTTATTCGCCATCTAGCGCTGTATGGTGGGCAAGTTATGGCTCAAGTCAACGTTTCTTATGGAGATTCTTGGAAGATGGTAAATATGAGAAAGGTACTCCTAGTCTACCAAAGATTATTTTAGTTCAGGCTGCTGGAGGGATTATTGCTGGTGCTACTGCATCCTGCATTACAACCCCATTGGATACTATCAAAACACGGTTACAGGTGATGGGACATGAAAAGAGAAGCTCTGTGAAACAAGTTGTTAAAGACTTAATCAACGAGGATGGTTGGAAAGGTTTATATAGAGGATTAGGTCCAAGATTTTTCAGCATGTCAGCATGGGGTACTTCAATGATATTGGCTTATGAATATCTGAAGCGCTTGTGTGCAAAAGATGAAGAGGCAGTTAATCAGCAAACTGGTAATTTTTCGATTGATTAG 969 0.4376 MASSEINWDRLDKTKFYVVGAGLFTGITVALYPVSVVKTRLQVASKETSEKNALSVVKGLLKTDGIPGLYKGFGTVITGAIPARIIFLTALETTKVASFKMIEPFKLSETSQAAIANGIAGMASSLLSQAVFVPIDVVSQKLMVQGYSGHAQYSGGLDVARKVLRSEGFRGLYRGFGLSVMTYSPSSAVWWASYGSSQRFLWRFLEDGKYEKGTPSLPKIILVQAAGGIIAGATASCITTPLDTIKTRLQVMGHEKRSSVKQVVKDLINEDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRLCAKDEEAVNQQTGNFSID* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01515 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 304 IPR018108 -
Rops5g01515 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 97 IPR018108 -
Rops5g01515 322 FunFam Mitochondrial substrate carrier family protein 17 308 - -
Rops5g01515 322 SUPERFAMILY Mitochondrial carrier 9 301 IPR023395 -
Rops5g01515 322 Gene3D Mitochondrial carrier domain 17 319 IPR023395 -
Rops5g01515 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 200 IPR018108 -
Rops5g01515 322 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 310 - -
Rops5g01515 322 Pfam Mitochondrial carrier protein 224 308 IPR018108 -
Rops5g01515 322 Pfam Mitochondrial carrier protein 115 202 IPR018108 -
Rops5g01515 322 Pfam Mitochondrial carrier protein 21 97 IPR018108 -
Rops5g01515 322 PRINTS Mitochondrial carrier protein signature 127 145 IPR002067 GO:0055085
Rops5g01515 322 PRINTS Mitochondrial carrier protein signature 228 250 IPR002067 GO:0055085
Rops5g01515 322 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Rops5g01515 322 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01515 Rops-Chr5 31418155 31425756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01515 6 309 Chloroplast and Mitochondria Gene Families AT5G15640 77.850 3.72e-175 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01515 K15121 - gmx:100819519 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01515 5 31418155 31425756 Rops8g00451 8 8533209 8538633 PCT