Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01513 ATGACACAACCAGCAACTTTGAAAGTTGTTCAAGTTTGCAGTGTGACACCGCTACAGGGAACAACCCCTTTCTCCACTCCAACCTCTTTGCCACTTACCTTCTTTGACCTTAAATGGCTAAGGTTTCCACCTGTTGAGCGTCTCTTCTTCTATGAATTCCCACACTCACCCACTTGTTTCTTTGATTCTGTTGTTCCCAATCTCAAACAATCTCTTGCACTCACACTCCAACATTTTCTCCCTCTTGCTGGTAACATCATTTGGCCCCTAGATTCACCCTACCCCATCATTAACTATGTCCCTGGTGATGGTGTCACCTTCCCTGTGGCTGAGTCCAATGCCAGTTTCAACCTTCTTTCTTCTGATCTCTGTGAAGCTGCTGAGTTACATCCCTTGATACCCCACTTGACCACTTCTCATGAACAAGCATCTGTCATGGCACTTCAACTCACTCTCTTTCCAAACTCTGGCTTTTGCATTGGAATAACCACACACCATGCAGCTTTTGACGGAAAATCTTCAACTTCGTTTATGAAATCATGGGCCTATGCATGCTCTGAACTTGGAGAATCACCGTCTTTATTATCATTACCTGAAAATCTAACACCTTTCTTTGACAGATCAGTGATAAGAGACCCCTCAGGAATCAGTGAAGTTTACTTGGATTCGTGGTTGAAGAATGGTGGACCAAATAATCGAAGTCTCAAGGTGTGGGAGTCTTTTACTAAGATACATACCAATGCAGTTAAAGGTTTGTTTGAATTAGCACCCTCACATATCCAAAAGCTTAAGCAATATGCACACACTAAGCTGAAAATGGAGGTTCAGTTATCAACATTTTCAGTTACATGTGCTCATGTGTTGGCATGCTTAGTCAAAGCACAACAACCAAAGGCCAATAAGGTAGTTTTCATATTTAGTGTGGATTGTAGATCCCGCTTAGACCCTCCAATTTCCCCCACGTATTTCGGAAATTGCGTTGTAGGCCAAATGGTTGTGGTGGAGACAAAGAATTTATTAGAAAAAGATGGGTTTATTAGTGCTTTGGAGGGAATAAATGAAGCTATGAAGAGGGTGAAGGATGGAGTGCTAAGTGGAGCAGAAACTCAGGTTTCAAATATACACAATGTAATGGAGAACAAAGTATACTCTATAGCTGGATCTCCACGGTTTGAGGTTTATAGTGTTGATTTTGGATGGGGAAAGCCAAAGAAGGTCGATATAACTTCGATAGACAAAACTGGAGCATTTTCTCTTTCGGAAAGTAGGAATAACAGTGGAGGAATTGAGATTGGATTGGTGTTAAATAAGCAAGAGATGGAAGCTTTTTCTGCCCTTTTTGCTCAAGGACTTGAATCCTCTTAA 1365 0.4154 MTQPATLKVVQVCSVTPLQGTTPFSTPTSLPLTFFDLKWLRFPPVERLFFYEFPHSPTCFFDSVVPNLKQSLALTLQHFLPLAGNIIWPLDSPYPIINYVPGDGVTFPVAESNASFNLLSSDLCEAAELHPLIPHLTTSHEQASVMALQLTLFPNSGFCIGITTHHAAFDGKSSTSFMKSWAYACSELGESPSLLSLPENLTPFFDRSVIRDPSGISEVYLDSWLKNGGPNNRSLKVWESFTKIHTNAVKGLFELAPSHIQKLKQYAHTKLKMEVQLSTFSVTCAHVLACLVKAQQPKANKVVFIFSVDCRSRLDPPISPTYFGNCVVGQMVVVETKNLLEKDGFISALEGINEAMKRVKDGVLSGAETQVSNIHNVMENKVYSIAGSPRFEVYSVDFGWGKPKKVDITSIDKTGAFSLSESRNNSGGIEIGLVLNKQEMEAFSALFAQGLESS* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01513 454 Pfam Transferase family 28 444 - -
Rops5g01513 454 Gene3D - 245 454 IPR023213 -
Rops5g01513 454 Gene3D - 6 234 IPR023213 -
Rops5g01513 454 PANTHER - 7 453 - -
Rops5g01513 454 SUPERFAMILY CoA-dependent acyltransferases 275 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01513 Rops-Chr5 31408521 31409885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01513 48 443 Monolignol Biosynthesis Gene Families AT5G48930 26.066 2.06e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01513 - - gmx:100785084 593.578