Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01509 ATGAGGAAAGTGAAGCTTTATATCAAAAGGATTGAGAACACAACAATTAGACGAATCACTTTCTCAAAAAGGAAGAATAGGCTTATCAAGAAAGCTTATGGAATATCTGTTCTTTGTGATGTTGATGTACCTCTGATCATGTTTTCCCCATCTGGGAGAGCTACTCTCTTCCCTCTGGCAATAACAGGGCTTACTGGCAAGAGTTGTCATGCTATAATTGGTGGTAACCACTGCTTGAATGATCTTGTAGCCAACATTGCCTACATGTCCAAAGGGGATGTCAAATTCAACCCATATAGTGTTCAATAA 309 0.3916 MRKVKLYIKRIENTTIRRITFSKRKNRLIKKAYGISVLCDVDVPLIMFSPSGRATLFPLAITGLTGKSCHAIIGGNHCLNDLVANIAYMSKGDVKFNPYSVQ* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01509 102 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 52 - -
Rops5g01509 102 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Rops5g01509 102 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops5g01509 102 ProSiteProfiles MADS-box domain profile. 1 57 IPR002100 GO:0003677|GO:0046983
Rops5g01509 102 Gene3D - 14 73 IPR036879 GO:0003677|GO:0046983
Rops5g01509 102 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops5g01509 102 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops5g01509 102 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops5g01509 102 SUPERFAMILY SRF-like 3 58 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01509 Rops-Chr5 31328078 31328697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01509 1 57 Type I MADS-box Gene Family AT1G22130 70.175 9.73e-23 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops5g01509 SRF-TF 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01509 - - cam:101506754 90.5077