Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01479 ATGATTAATAGTTCAAAAGAAGCAGATTTTCCATTGAAGCAGGAAGGTCTTTCAAGTGATGAAAAAGCAAAGGCTTCATCATCATCATCACAATGGCTAAAATTGAAGGATCCAAGGATTGTGAGGGTATCTAGAGCCTTTGGAGGAAAAGATAGGCATAGCAAGGTATGCACAATAAGAGGACTAAGAGATAGAAGGGTGAGGCTTTCAGTTCCCACTGCAATTCACCTCTATGATCTTCAAGATAGGTTAGGGCTCAATCAACCTAGTAAGGTTGTTGATTGGTTGCTAAATGCAGCTAAACATGAAATTGATGAACTCCCACCACTTCCAATACCTCCAGGGAACTTCGCCTTTGGTTATCCATCTCTTGGTACTTCTAATCATGTCAGCACCTTTCATGACCAAAACACAAATCTATGGAAATCAAAGTCTAAACAAGTTTCAGGACAAATGGTTAGTGAAAAACAAAATTGGATAAATAGAAGTGAAGAGGAGGATAAACAAGGAAGCAATGATGGTCCTAGTGCACAACATGTTTTACCAAATAATCTCTTACCAAGACCAAATCATCCTTCTTTCTTGGGCTTGTTGAATACTATGCCAATTGGTTACCAATTGGAACCTTCAGCTGATGTTGCTCAGTTAGCAAACCTTGGATTTTTGAACCAAAATGATATACACAGCATTAATGTTGTGCCTTTCCCATCAACACTGTCTCTATCAACTGGGAGTACTTCTCAGATTTTGGTGTGTCCTCCTGGAGCAACACAACCATATTTCCCTTCACATGTTGCTGCAATGGAGATGGATCCAAGGCAAATCAACCACTATCAAATGTTGAGTTCAAGTTCTCAAAATCTCTTGACCAATTCTCTCAATCCATCTCAACACCTCATGAGCCAATCAGGGAAAGCATTCAGTTTGGGTAAAACGTAA 939 0.3951 MINSSKEADFPLKQEGLSSDEKAKASSSSSQWLKLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFAFGYPSLGTSNHVSTFHDQNTNLWKSKSKQVSGQMVSEKQNWINRSEEEDKQGSNDGPSAQHVLPNNLLPRPNHPSFLGLLNTMPIGYQLEPSADVAQLANLGFLNQNDIHSINVVPFPSTLSLSTGSTSQILVCPPGATQPYFPSHVAAMEMDPRQINHYQMLSSSSQNLLTNSLNPSQHLMSQSGKAFSLGKT* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01479 312 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 287 IPR005333 GO:0003700
Rops5g01479 312 ProSiteProfiles TCP domain profile. 49 107 IPR017887 -
Rops5g01479 312 MobiDBLite consensus disorder prediction 161 185 - -
Rops5g01479 312 MobiDBLite consensus disorder prediction 1 30 - -
Rops5g01479 312 Pfam TCP family transcription factor 49 161 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01479 Rops-Chr5 30615813 30618178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01479 32 280 TCP Transcription Factor Family AT3G02150 45.693 4.47e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops5g01479 TCP 9.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01479 - - aprc:113867214 463.381