Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01439 ATGGCGACGGCGAAACCCCAACGTTCTCCAGAGGAAGTAGAAGACGTAATCATCCGAAAAATCTTCCTCGTTTCAATCACCGAAACCCTAGACAACAACACCGATTCGAGAATCGTGTATTTGGAACTAACGGCAGCGGAGATTCTCAGCGAAGGGAAAGAGCTTCGTTTCAATCGCGATTTAATGGAGAGAGTTCTAATCGATCGTCTCTCTGGCGATTTCTCCGTCGCCGGAGAAGAATCGCCGTTCAATTACCTCGTAGGTTGTTACCAACGCGCACACGATGAATCGAAGAAAATCGCGAGCATGAAGGACAAGAATCTGAAATCGGAGATGGAAACTGTGGTGAAGCAAGCGAAGAAACTCTGCGTTTCGTATTGTAGAATTCACCTCGCGAATCCTGAACTTTTCCCTAGCAAGAATTCGAATTCCGGCACCGGAGCTTCACCGCTTTTGCCGTTGATTTTTGCCGAAGTCGGCGGTGGAGGAATCGGAGGGTTTGGCGGTGGAGGAGGAAGTGGAGTGAAGAGTCCACCGGGGTTTCTAGAAGAATTTTTGAGGGATTCTGATTTTGAAAGCTTGGATAGAATTTTGAAAGGGTTGTATGAGGAATTGAGAGGGAGTGTGATGAAGGTTTCTGCACTTGGGAATTTTCAGGATTCTCTTAGGGCTTTGCTGTTTTTGGTTAGGTTTCCAATTGGAGCAAAGTCACTTGTTAGTCATGAGTGGTGGATTCCCAAAGGTGTTTATATGAATGGACGTGCTATTGAGATGACCAGCATTTTGGGACCCTTTTTCCATATCAGTGCTCTTCCTGATCAAGCCTTCTTCAGGAGCCAGCCCGATGTTGGGCAGCAGTGCTTTTCTGATACAGCAACACGACGACCGGCTGATTTGTTATCTTCATTCTCCACTATCAAAACTGTTATGAATAATTTATATGATGGCCTGGCTGAAGTACTCCTCATCCTCCTTAAAAGTACAGATACTCGTGAAAATGTACTTGAGTATCTTGCAGAGGTGATCAATATAAATGCATCCAGGGCTCATATTCAGGTTGACCCTATTACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTCATGCTTCGTCTCTGTGAACCATTTTTAGATGCAAATTTAACAAAAAGGGACAAAATTGATCCAAAATTTGTACACCACTCAAACCGTTTGAAGCTAAGTGGGTTGACTGCTGTTCATGCATCATCAGAAGAAGTTGCTGAGTGGCTTAATAGTAAAAACCCAGCCAAGTCTGGTGAAGTCAATCAGTATAATGATGGTCAGAAACGCTTGCAACAATCTCAAGAGGCCAGTAGTTCTGGTAGTAATAATGCTGGCGAGCTTTCGAATGAAAATTCCACACGTGGTGAAAAGACGAAATATTCATTTATTTGCGAATGCTTCTTTATGACTGCAAGAGTGCTCAACCTAGGCCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTGGTAGATCTGAAGATGCTCTTTCCACACTTAAAGCCATGCAGGAGCAGTCTCCTTCACCTCAGTTGAAATTAGATATAACTCGACTTGAGAAAGAACTAGAGTTGCACTCACAGGAAAAGTTTTGTTATGAAGCTCAGATATTGAGGGATACTACACTTATTCAGAATGCACTTTCCTTCTACCGCTTGATGATTGTTTGGTTGGTTGGCTTGGTTGGTGGATTTAAGATGCCTCTACCACCAACTTGCCCAATGGAATTTGCTGCCATGCCTGAACACTTTGTAGAAGATGCCATGGAACTTCTAATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTTGTGCTGGATGAGTTTATGAACTTTATAATTATGTTCATGGCCAGCCCTGAATTTATCAAAAACCCATATCTGAGAGCAAAGATGGTTGAAGTGTTGAACTGCTGGATGCCCCGCGGGAGTAGCTCATCTGCTACGGCCACTCTATTTGAAGGGCACCAACTGTCTCTCGAGTATCTTGTGAGGAATCTTCTAAAACTTTATGTTGACATTGAGTTCACTGGTTCCCATACGCAGTTCTATGACAAGTTTAACATCCGCCATAATATTGCCGAACTCCTCGAATACCTGTGGCAGGTCACTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAGGAGGAAAAGGGTGTCTATCTGAATTTCTTAAACTTTCTGATCAATGATAGTATTTATCTTCTTGACGAAAGTCTGAACAAAATTCTTGAACTAAAAGAACTGGAGGCTGAGATGTCAAATAAGGCTGAATGGGAGAAACGGCCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCTAACGAAGATGTCAGTCTGCTTGCATTTACTTCAGAGCAGATTACTGCACCATTCCTACTTCCTGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTACTTCCTGCTGCAGTTGGTGGGTCCCCAAAGAAAATCACTCAGTCTGAAAGATCCTGAGAAATATGAATTTCGCCCAAAGGAATTGCTAAAAAAGATTGTGCAAGTATATATTCATCTGGCCAGAGGTGACACAAATTCAATCTTCCCAGCTGCCATCTCAAAGGATGGTCGATCATACAATGATCAGTTGTTTAGTGATGCTGCAGAAGTCCTGCATAGAATTCGTGAGGATGGGAGAATTATACAGGAATTTATTCAACTCGGTGCTAAAGCTAAAGTTGCTGCTTCAGAGGCCATGGATGCCGAAGCTACTCTAGGAGAAATACCTGATGAATTCCTCGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGGATCACGGTTGATCGTCCTGTCATCCAGAGGCATCTTCTTAGTGATAGTAGTGACCCATTCAACCGTTCTCATCTTACTGTGGATATGCTGATTCCTAATGATGAACTAAAAGCTAGAATTGAGGAGTTTGTGAGGTCTCAGCAAATGAAGAAACACAGTGAAGGCCTAAGCATAGAGAGTTCCAAGGCTACCATTCAGACCACAAATGGGGAAATGTTGATTGATTAG 3126 0.4277 MATAKPQRSPEEVEDVIIRKIFLVSITETLDNNTDSRIVYLELTAAEILSEGKELRFNRDLMERVLIDRLSGDFSVAGEESPFNYLVGCYQRAHDESKKIASMKDKNLKSEMETVVKQAKKLCVSYCRIHLANPELFPSKNSNSGTGASPLLPLIFAEVGGGGIGGFGGGGGSGVKSPPGFLEEFLRDSDFESLDRILKGLYEELRGSVMKVSALGNFQDSLRALLFLVRFPIGAKSLVSHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDQAFFRSQPDVGQQCFSDTATRRPADLLSSFSTIKTVMNNLYDGLAEVLLILLKSTDTRENVLEYLAEVININASRAHIQVDPITCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDPKFVHHSNRLKLSGLTAVHASSEEVAEWLNSKNPAKSGEVNQYNDGQKRLQQSQEASSSGSNNAGELSNENSTRGEKTKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDIGRSEDALSTLKAMQEQSPSPQLKLDITRLEKELELHSQEKFCYEAQILRDTTLIQNALSFYRLMIVWLVGLVGGFKMPLPPTCPMEFAAMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRGSSSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVTSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNKAEWEKRPVQERQERTRLFHSQENIIRIDMKLANEDVSLLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKELLKKIVQVYIHLARGDTNSIFPAAISKDGRSYNDQLFSDAAEVLHRIREDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSSDPFNRSHLTVDMLIPNDELKARIEEFVRSQQMKKHSEGLSIESSKATIQTTNGEMLID* 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01439 1041 CDD RING-Ubox_UBE4A 945 1014 - -
Rops5g01439 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 942 1021 IPR013083 -
Rops5g01439 1041 Coils Coil 528 548 - -
Rops5g01439 1041 ProSiteProfiles U-box domain profile. 942 1016 IPR003613 GO:0004842|GO:0016567
Rops5g01439 1041 PANTHER UBIQUITINATION FACTOR E4 3 1019 IPR045132 GO:0000151|GO:0030433|GO:0034450
Rops5g01439 1041 FunFam Ubiquitin conjugation factor e4 a 942 1020 - -
Rops5g01439 1041 SUPERFAMILY RING/U-box 935 1014 - -
Rops5g01439 1041 Pfam U-box domain 943 1014 IPR003613 GO:0004842|GO:0016567
Rops5g01439 1041 Pfam Ubiquitin elongating factor core 262 926 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Rops5g01439 1041 Coils Coil 750 770 - -
Rops5g01439 1041 MobiDBLite consensus disorder prediction 426 462 - -
Rops5g01439 1041 SMART Ubox_2 946 1009 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01439 1 1041 U-box Gene Family AT5G15400 75.714 0.0 1634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01439 K10597 - gmx:100806175 1808.88