Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01427 ATGGGTTGCGTTAACTCCAGAAATGCGGTTGCCGGAGATTCTTCTCCGCCACCGGCCGGCGGTGACATTGTGGAAGGTCATCATAAATCCAAGGCCAATTCAAGGGTGTTGGTTTCGGAACCAAAATCTTCTTCAGAGGATAACAGGAAGAACAAGTTCACCAGAAACGGCTCCAGAAAAAGTGGTAGCTCTTTCAGCTTCAAGATTGGGTTCAATCATAGGTATGTGGAGGCTGAACAGAATGCTGCTGGTTGGCCTCCTTGGCTCACTGCTGCTGCAGCAGAAGCTGTTCAAGGATGGATACCCCTCAAAGCTGATTCTTTTCAGAAGTTAGATAAGATTGGACAAGGTACTTATAGCAGTGTGTTCCGAGCACGTGAAGTTGAAACTGGGAGAATGTTTGCTCTCAAGAAGGTGCGCTTTGACAATTTCCAACCTGAGAGCATTAGGTTCATGGCAAGAGAGATAACAATTCTCAGGAGGCTTGATCACCCAAATATCATGAAATTGGAGGGCATAATCACTTCCAGACTATCAAACAGCATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCGTGTCCTGACATCATGTTCACTGATTCACAGATTAAATGTTACATGAGGCAACTATTAAGTGGACTTGAGCATTGTCATGTCCGTGGTATCATGCATAGAGACATCAAAGTATCAAATATCTTATTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGCCCCAATAACAAGCATCCTTTAACAAGTCGAGTAGTGACTCTATGGTATCGTCCTCCTGAACTCTTGATGGGAGCAACCAATTATGGAGTATCAGTGGATCTATGGAGTGTTGGCTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTGTCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTTAAGCTGTGTGGTTCTCCACCTGATGAGTACTGGAAAAAGTGCAAGCTTCCTCATGCAACAATGTTTAAACCTCAGGCTAATTATGAAAGCTCTCTTCGGGAGAGATGTGCAGATTTTCCTGAAACTGCTGTAAATCTAATTGAGACTTTATTGTCTATTGACTCTAGCAAGCGGGGGACTGCCTCTTCTGCCCTAATATCTGAGTATTTCAGCACCAAGCCATATGCTTGTAATCCATCAAGCCTGCCAAAATATCCACCCAGTAAAGAAATGGATGCTAAGAATCGGGAAGAGGGATCCAGGAAAAAGACAGGAGGAGGTAAAGTACGAGAGGCTGTAACATCAAGAAGGCAGCAAAGACGAGTCAGTAAAGCTTTGCAAGAACCAAAAATTTTTGGTAAACCAACTTCAAAAGAGGACTTGCAGAATATTTCTCAAAATGTGCATAGAGATGATGGTAAAGCACATCTGACAAAGGGACAAGGAGGAGCTATGCACAAAGAGCAACCAAAGTCTTCATTGGATACAATATCAGAGACTAACCAAATGAATGTTGCTGATGATAATGGCTATAGTGTACCAATACAAGTCCCAGGATCTAATAAAGACTTTACATGGGTAAAAAGGAGAAAACCAGATGCATCATCCACTCTATCAGATGGCTCAAAAAGCAAAATTAGTGCACTGGATCCAAACTTTGCAAAAGGCACATATGATTTACCCACACAAAGGATATCCATGGACTTTGATCCCAAAGAACTGATAAATGCACAGGGTCACAGAGAAGAACAAGGTGCACATTGGAATGAAAATGGCATACGGCGTGTGGTCCGAAAATCAAGGTTTGGAAGAGAGAAATGA 1827 0.4209 MGCVNSRNAVAGDSSPPPAGGDIVEGHHKSKANSRVLVSEPKSSSEDNRKNKFTRNGSRKSGSSFSFKIGFNHRYVEAEQNAAGWPPWLTAAAAEAVQGWIPLKADSFQKLDKIGQGTYSSVFRAREVETGRMFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSCPDIMFTDSQIKCYMRQLLSGLEHCHVRGIMHRDIKVSNILLNNEGVLKIGDFGLANTISPNNKHPLTSRVVTLWYRPPELLMGATNYGVSVDLWSVGCVFAELFLGKPVLKGRTEVEQLHKIFKLCGSPPDEYWKKCKLPHATMFKPQANYESSLRERCADFPETAVNLIETLLSIDSSKRGTASSALISEYFSTKPYACNPSSLPKYPPSKEMDAKNREEGSRKKTGGGKVREAVTSRRQQRRVSKALQEPKIFGKPTSKEDLQNISQNVHRDDGKAHLTKGQGGAMHKEQPKSSLDTISETNQMNVADDNGYSVPIQVPGSNKDFTWVKRRKPDASSTLSDGSKSKISALDPNFAKGTYDLPTQRISMDFDPKELINAQGHREEQGAHWNENGIRRVVRKSRFGREK* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01427 608 ProSiteProfiles Protein kinase domain profile. 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01427 608 MobiDBLite consensus disorder prediction 1 61 - -
Rops5g01427 608 SMART serkin_6 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01427 608 FunFam probable serine/threonine-protein kinase At1g54610 191 432 - -
Rops5g01427 608 PANTHER CELL DIVISION PROTEIN KINASE 106 396 - -
Rops5g01427 608 Gene3D Transferase(Phosphotransferase) domain 1 191 431 - -
Rops5g01427 608 SUPERFAMILY Protein kinase-like (PK-like) 103 397 IPR011009 -
Rops5g01427 608 Pfam Protein kinase domain 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01427 608 MobiDBLite consensus disorder prediction 402 447 - -
Rops5g01427 608 FunFam probable serine/threonine-protein kinase At1g54610 95 190 - -
Rops5g01427 608 MobiDBLite consensus disorder prediction 411 446 - -
Rops5g01427 608 Gene3D Phosphorylase Kinase; domain 1 95 190 - -
Rops5g01427 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Rops5g01427 608 CDD STKc_CDK9_like 108 392 - -
Rops5g01427 608 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01427 Rops-Chr5 29642661 29649873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01427 100 444 Core Cell Cycle Gene Families AT5G10270 45.278 1.50e-106 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Rops5g01427 Pkinase 2.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01427 - - gmx:100790917 929.472