Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01423 ATGGCAAGGAAGAGAAAGGCTGTTGAAGTAGTGGAAGAGGGAAACCTATCTGAGGGAACCATGGCTTGGGATGAGATGATGAAGCAAGCTGCAGCACTTGGAGGAGCAAGGAGAACAAGGAAGAGGTTTGTTGGTGTAAGGCAAAGACCATCTGGTAGATGGGTTGCTGAGATAAAAGATACCATTCAGAAGATAAGGGTGTGGTTAGGAACCTTTGATACAGCTGAGGAAGCTGCAAGAGCTTATGATGAAGCTGCTTGCTTGCTTCGCGGCGCCAACACAAGGACTAACTTCTGGCCTTGTTCTCAATCCTCTTCAAGTCCAGCTCTTTCTTCAAAGATCACCAATCTCCTCCTTCAAAGGCTCAAAGAAAGGAACAACTCTTGCTCTTCTTCCTCCTCCTCTAGCTCCCTTTTTATCAACCACCAAATGCAACAAGTAGATGCATATGGAGCAGGATCAACAGAATTCTCAATTGACCAATTCACTGATTTCCTTAATGATCCTGAAGATTACAGCACAAGCAACAATGACTTCATCAACAACAGTGCACAAATTGATTACATCACAAGTAGTTTTGAATCATGTTTAACCGAAAAGGATGACTTCAAAGTGACAGAAATAGATATGGAATACAAATCTAGCAATGTGACACAAACTTCAAGTAATGACAGCAATTCAGGTGTGGAAAGAGAGGAAGACAGTGAAGAAGAAGGCACTGATTTGGCTGTCCAAGGGACTAATTTGGATGTCCCGGATTTTGGATTTCTGGACAATGTTGCTCCACCATGTTACTATTCTCCTTTTGAGATAGCTGAAGAGATGGAGGAGCCTGTGGAGCCAGAGAACTGTGGTGATGAGCCTTCAATGCTTAGAGCTGTCATGAAGAGAATGAAATATGAGAGGAAGTTCTCAGCTTCTCTCTATGCATTCAATGGGATACCTGAGTGCTTGAAGTTGAAAGTGGAATCAGGAAACATAAAGGGAAGAGGAATAGCTGATCAATTAACCAACCTCCAGATGGCTTGTAGCAAAAACAAACTTGAGAAGAATAAGGAGGAGAAAGAAGAATACATGGTAGCAATGGATGGGAAAGAGGAAGAAAATCCTCAAAGATCAATTGATATGGATTCCTCTTCTTCATCTAGTATTGATGAAGAAATGTTACTTTGGAATTCAGTAGATCTTCCTCCTATTTGCTTTGTTAACTTACTGGAAAACGGCTCATTCAATTAG 1236 0.4159 MARKRKAVEVVEEGNLSEGTMAWDEMMKQAAALGGARRTRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSSSPALSSKITNLLLQRLKERNNSCSSSSSSSSLFINHQMQQVDAYGAGSTEFSIDQFTDFLNDPEDYSTSNNDFINNSAQIDYITSSFESCLTEKDDFKVTEIDMEYKSSNVTQTSSNDSNSGVEREEDSEEEGTDLAVQGTNLDVPDFGFLDNVAPPCYYSPFEIAEEMEEPVEPENCGDEPSMLRAVMKRMKYERKFSASLYAFNGIPECLKLKVESGNIKGRGIADQLTNLQMACSKNKLEKNKEEKEEYMVAMDGKEEENPQRSIDMDSSSSSSIDEEMLLWNSVDLPPICFVNLLENGSFN* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01423 411 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Rops5g01423 411 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Rops5g01423 411 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Rops5g01423 411 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Rops5g01423 411 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Rops5g01423 411 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Rops5g01423 411 MobiDBLite consensus disorder prediction 215 241 - -
Rops5g01423 411 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Rops5g01423 411 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Rops5g01423 411 Coils Coil 348 368 - -
Rops5g01423 411 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 305 - -
Rops5g01423 411 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01423 Rops-Chr5 29606920 29608155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01423 36 118 AP2-EREBP Transcription Factor Family AT5G19790 69.880 6.99e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops5g01423 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01423 K09286 - gmx:100790398 612.068