Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01413 ATGGAAGAATCCTTAGGTGTGAGAAAAGGTGCATGGTGTAAAGAGGAAGATGACCTTCTCAGGGCTTGTGTAAGAAAATATGGGGAAGGAAAATGGCACCTAGTACCCACAAGAGCAGGCTTGAACAGATGCCGCAAAAGCTGTAGACTGCGGTGGTTGAATTATCTAAAACCCAGTATCAAGCGGGGAGTGTTCAGTGAGGATGAAGTTGACATGATGAAAAGATTGCATAGACTTTTGGGGAACAGATGGTCCCTGATTGCTGGAAGACTTCCTGGAAGAACTCCTAATGATGTGAAGAACTTCTGGAACTCCAATACTCGCAGGAAGGTATCATCATCATCAAAAGAGGAAGAGATCAAAGCAAAGCCAAAGGAAACAATGAAACCTCACCAAGTGATAAGGCCTCAGCCACGAACTTTCTCATCAACTTCACCCTGGTTGAGGAGGAGATTCCCCATAGAAGATCAAAGTGAGGCCAAACAAGCACTTACTCAAGCATGTGCAGCTTCATCAAAGTGCAATGATTCCCAAGATCTAAGTGGGGAAACTATAATGGGTGACAAGGGAGGCAACTTAGAAAATGACAAATGGTTCTTAAGTGAACAAGATTGGAAGCTCTTGGAAGAACTTGATTGGGTTGAGGAGCTTCCAGTCATTGAAGATCAAAGCTGGAGTGATTTTCTTCTTGATGTCAATCCTCCTCTTTATAGAGAACTTTTCCCAGTCGAAGGTTCCCTCCACCATAGACTCAGCTACTTCCTTAGCCCTGTTGAAACTGAAAGATGGTCCCTGATTGCTGGAAGACTTCCTGGAAGAACTCCTAATGATGTGAATAACTTCTGGAACACCAATACTCGCAGGAAGGTATCATCATCATCAAAAAAGGAAGAGATCAAAGCAAAGCCAAAGGAAACAATGAAACCTCACCAAGTGATAAGGACTCAGCCACGAACTTTCTCATCAACTTCACCCTGGATGAGGAGGAGATTCCCCATAGAAGATCAAAGTGAGGCCAAACAAGCACTTACTCAAGCATGTGCAGCTTCATCAAAGTGCAATGATTCCCAAAGTGGGGAAACTATCATGGATGACAAGGGAGGCAACTTAGAAAATGACAAATGGTTCTTAAGTGAACACGATTGGAAACACTTGGAAGAACTTGATTGGGTTGAGGAGCTTCCAGTCATTGAAGATCAAAGCTGGAGTGATTTTCTTCTTGATGTCAATTTGTGGGATACATAA 1245 0.4313 MEESLGVRKGAWCKEEDDLLRACVRKYGEGKWHLVPTRAGLNRCRKSCRLRWLNYLKPSIKRGVFSEDEVDMMKRLHRLLGNRWSLIAGRLPGRTPNDVKNFWNSNTRRKVSSSSKEEEIKAKPKETMKPHQVIRPQPRTFSSTSPWLRRRFPIEDQSEAKQALTQACAASSKCNDSQDLSGETIMGDKGGNLENDKWFLSEQDWKLLEELDWVEELPVIEDQSWSDFLLDVNPPLYRELFPVEGSLHHRLSYFLSPVETERWSLIAGRLPGRTPNDVNNFWNTNTRRKVSSSSKKEEIKAKPKETMKPHQVIRTQPRTFSSTSPWMRRRFPIEDQSEAKQALTQACAASSKCNDSQSGETIMDDKGGNLENDKWFLSEHDWKHLEELDWVEELPVIEDQSWSDFLLDVNLWDT* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01413 414 Gene3D - 9 61 - -
Rops5g01413 414 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 261 359 - -
Rops5g01413 414 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Rops5g01413 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 60 IPR017930 -
Rops5g01413 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 262 290 IPR017930 -
Rops5g01413 414 CDD SANT 65 106 IPR001005 -
Rops5g01413 414 Gene3D - 64 135 - -
Rops5g01413 414 Gene3D - 204 315 - -
Rops5g01413 414 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Rops5g01413 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Rops5g01413 414 CDD SANT 262 285 IPR001005 -
Rops5g01413 414 CDD SANT 11 56 IPR001005 -
Rops5g01413 414 SUPERFAMILY Homeodomain-like 260 292 IPR009057 -
Rops5g01413 414 MobiDBLite consensus disorder prediction 111 132 - -
Rops5g01413 414 MobiDBLite consensus disorder prediction 292 311 - -
Rops5g01413 414 SMART sant 61 109 IPR001005 -
Rops5g01413 414 SMART sant 201 288 IPR001005 -
Rops5g01413 414 SMART sant 8 58 IPR001005 -
Rops5g01413 414 MobiDBLite consensus disorder prediction 292 316 - -
Rops5g01413 414 FunFam Myb transcription factor 9 61 - -
Rops5g01413 414 MobiDBLite consensus disorder prediction 108 144 - -
Rops5g01413 414 Pfam Myb-like DNA-binding domain 62 105 IPR001005 -
Rops5g01413 414 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Rops5g01413 414 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01413 Rops-Chr5 29445288 29455734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01413 251 364 MYB Transcription Factor Family AT1G66370 30.328 2.99e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops5g01413 Myb_DNA-binding 3.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01413 - K09422 lang:109335100 261.151