Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01409 ATGGGACGATCTCCATGTTGTGACAAGGTTGGTTTAAAGAAAGGACCATGGACTCCAGAAGAAGATCAAAAGCTCTTAGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTGCCTTGCCAGCAAAAGCTGGACTTCAAAGGTGTGGTAAGAGCTGCAGACTAAGATGGACCAATTATCTTAGACCTGATATTAAGAGGGGGAAGTTCAGTTTGCAAGAAGAGCAAACCATTATTCAACTCCATGCTCTCTTAGGGAACAGGTGGTCGGCTATAGCAACACACTTGCCAAAGAGAACCGATAATGAGATCAAGAACTATTGGAACACACATCTTAAGAAAAGGTTAACCAAAATGGGGATTGACCCTGTGACCCACAAGCCCAAAAATGATGCCCTTCTCTCTAGTGACGGTCAATCCAAAACCGCCGCAAATCTCAGCCACATGGCTCAGTGGGAAAGTGCTCGTCTTGAAGCTGAAGCAAGACTTGTTAGGGAATCAAAACTACGTTCACATTCACTACAACATCATCAACTTGGAAGTAGTTCTCATGCATTTGCATCTTCATCTTCAGCATCAACTTCAGCCCAAGTTCTTAACAACAAACAAGAAGCACCACCACCACCTCCTCCTTTGCCCTCATCACGTTCCCTTGATATGTTTAAAGCTTGCAATAATGGAGGGTGGTTAAAGGGTAACAATGAAGGAAATGGTGGCATTACAAGCACTAATGGGATCAAAGAGAATCTTGAATCTCCTACTTCTACCCTTTCTTTTTCAGAGAATGTGCCACCAATTATGACTAATGGAGGACTTGGAGGTGAAAATAATAATAACAATAACACAGTGCCAATGATTGAGTTTGTGGGAACTTCAGGTTCATCTGAAACAACAGGAGTTGTGAAAGAAGAAGGTGAACAAGATCAATGGAAAGGTTATGAAAGTTCAATGACTTTTACTTCTGGTTTGCATGAGTTGACAATGTCAATGGAAGGTACATGGACCTCTGAATCTCTTAGGACTAGTGGTTCTTCATCACATGGAGCTGTTGGAGATGCCATTGCCGAAGAAGGGTTCACTAATCTCTTGCTTAAAATTAACTCTGATGAAAGGAGTTTGTCTGAAGGTGGAGGAGAATCTAACAATGGTGATGGAAGTGGCAGTGATTTCTATGAAGATAACAATAACTACTGGAATAGCATTCTTAATTTAGTTAATTCTTCACCTTCTGATTCCCCAATGTTCTGA 1248 0.4159 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKLRSHSLQHHQLGSSSHAFASSSSASTSAQVLNNKQEAPPPPPPLPSSRSLDMFKACNNGGWLKGNNEGNGGITSTNGIKENLESPTSTLSFSENVPPIMTNGGLGGENNNNNNTVPMIEFVGTSGSSETTGVVKEEGEQDQWKGYESSMTFTSGLHELTMSMEGTWTSESLRTSGSSSHGAVGDAIAEEGFTNLLLKINSDERSLSEGGGESNNGDGSGSDFYEDNNNYWNSILNLVNSSPSDSPMF* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01409 415 CDD SANT 69 112 IPR001005 -
Rops5g01409 415 MobiDBLite consensus disorder prediction 132 147 - -
Rops5g01409 415 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops5g01409 415 CDD SANT 16 61 IPR001005 -
Rops5g01409 415 FunFam MYB transcription factor 69 116 - -
Rops5g01409 415 Gene3D - 13 66 - -
Rops5g01409 415 SMART sant 66 114 IPR001005 -
Rops5g01409 415 SMART sant 13 63 IPR001005 -
Rops5g01409 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops5g01409 415 MobiDBLite consensus disorder prediction 122 147 - -
Rops5g01409 415 MobiDBLite consensus disorder prediction 168 219 - -
Rops5g01409 415 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 243 - -
Rops5g01409 415 Gene3D - 69 116 - -
Rops5g01409 415 MobiDBLite consensus disorder prediction 174 202 - -
Rops5g01409 415 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops5g01409 415 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops5g01409 415 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops5g01409 415 MobiDBLite consensus disorder prediction 370 391 - -
Rops5g01409 415 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops5g01409 415 FunFam MYB-related transcription factor 13 66 - -
Rops5g01409 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01409 Rops-Chr5 29345742 29348378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01409 1 415 MYB Transcription Factor Family AT3G01140 56.429 3.02e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops5g01409 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01409 K09422 - gmx:100101835 594.734