Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01408 ATGGAAGCAATGATGAACAATTCAAGAGATGTAGAGGGAGACCAGAAGTTTGAATTGCCTCCAGGATTCAGGTTTCATCCAACAGACGAAGAACTCATAACTCACTACCTCTCACAAAAGGTTCTTGATAGCTGCTTCTGTGCTAGAGCCATTGGAGAAGCTGATTTGAACAAGTGTGAACCATGGGATTTGCCTTGGAGGGCTAAAATGGGTGAAAAGGAGTGGTATTTTTTCTGTGTGAGGGACAGAAAATACCCAACTGGTCAAAGGACAAATAGGGCCACTGGTGCTGGCTATTGGAAGGCCACAGGCAAAGACAAAGAGATATACAGGGCAACGACACTTATTGGAATGAAGAAAACTCTAGTTTTCCACAAAGGAAGAGCTCCAAAAGGTGAAAAAACTAACTGGGTCATGCATGAATACAGAATGGAGGATAAACATGCTATGTATGATCAACCCAAAACAGCTATGAATGAGTGGGCTATTTGTAGAGTTTTTGAGAAGAGTTCTTGTGGAGAGAAAATGCATATTCCTGAGTTGGTGAGGTTTAGCTCCTTTGGTAAGGAACTACCTCCTTTGATGGATTCTTCTCCATACCATAGTGAAACAAAAACTGCTCTCGGAGGGTCATCACATGTGACATGCTTCTCTGAACCAAATCAAACTGAGGATCAAAGAACACAAGATGATTTAGTTGATAGCTTTGAAACTCCCATTTCGTATTCTTCAAATCCCTCTGATATTTTCCCTACTTCATGGACTTTTACCAGAGCTGCCCCTACCATGTCCCTCCAATCCACACAAGTTGCACAAGTTGGGAATTCACAGTGCTCAGATTATGTCATGATTCAAGAAGAGTCCATGTTGAGGATGTTGATTGAAAACCATGGATCAGCTGCAAAGCAAAAAAATCAGAAAGCTATGGAAAGAGACTTTGATGCTGACAACTCCTCTGTGATGTACAACAATGAAATTCAAAGATCATTTGGGAATCAGGAATATTTATCAGCTTCAGTAGGACATGTGGACACTGGTTGCCTATGGAATTTCTAA 1056 0.4119 MEAMMNNSRDVEGDQKFELPPGFRFHPTDEELITHYLSQKVLDSCFCARAIGEADLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGQRTNRATGAGYWKATGKDKEIYRATTLIGMKKTLVFHKGRAPKGEKTNWVMHEYRMEDKHAMYDQPKTAMNEWAICRVFEKSSCGEKMHIPELVRFSSFGKELPPLMDSSPYHSETKTALGGSSHVTCFSEPNQTEDQRTQDDLVDSFETPISYSSNPSDIFPTSWTFTRAAPTMSLQSTQVAQVGNSQCSDYVMIQEESMLRMLIENHGSAAKQKNQKAMERDFDADNSSVMYNNEIQRSFGNQEYLSASVGHVDTGCLWNF* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01408 351 Gene3D NAC domain 28 173 IPR036093 GO:0003677|GO:0006355
Rops5g01408 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 276 - -
Rops5g01408 351 MobiDBLite consensus disorder prediction 199 223 - -
Rops5g01408 351 MobiDBLite consensus disorder prediction 198 230 - -
Rops5g01408 351 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Rops5g01408 351 FunFam NAC domain-containing protein 100-like 28 173 - -
Rops5g01408 351 SUPERFAMILY NAC domain 16 169 IPR036093 GO:0003677|GO:0006355
Rops5g01408 351 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01408 Rops-Chr5 29322642 29324496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01408 18 351 NAC Transcription Factor Family AT5G07680 52.199 4.16e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops5g01408 NAM 6.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01408 - - gmx:100785620 517.694