Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01401 ATGTTGACTGACCTCTATTTATTCCATCTCCAATTCCACCTCCATTTCCTCAAACAACTCCTTTCAAGGTTCAGCTTCTTGAAAATGGCTCATCTTGGCTTTCTTGTTCTTGGATTTATCTCCATGTTCTCATATGTTAATGGTTATGGTGGTTGGACTAATGCACATGCCACCTTCTATGGTGGCAGTGATGCTTCTGGGACAATGGGTATGGTACGGTGCAGAAGAAGAGGTGGAATCAGGTTCACAATCAATGGACATTCTTACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCACTCCGTAGCCATCAAAGGTTCAAGAACTAGATGGCAAGCGATGTCAAGGAATTGGGGCCAAAACTGGCAGAGCAATTCCTACCTAAATGGACAGAGCCTTTCCTTTATAGTCACCACCAGTAATGGCCACAGGTTGGTCTCATACAATGTTGCCCCAGCTAGTTGGTCCTTTGGACAGACCTACACTGGAAGACAGTTTCTCTACTAA 522 0.4425 MLTDLYLFHLQFHLHFLKQLLSRFSFLKMAHLGFLVLGFISMFSYVNGYGGWTNAHATFYGGSDASGTMGMVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFIVTTSNGHRLVSYNVAPASWSFGQTYTGRQFLY* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01401 173 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 89 168 IPR007117 -
Rops5g01401 173 PANTHER EXPANSIN-A15 35 70 IPR002963 GO:0009664
Rops5g01401 173 Gene3D - 79 172 IPR036749 -
Rops5g01401 173 FunFam Expansin 79 171 - -
Rops5g01401 173 Pfam Expansin C-terminal domain 80 157 IPR007117 -
Rops5g01401 173 SUPERFAMILY PHL pollen allergen 76 168 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01401 Rops-Chr5 29227024 29229031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01401 72 173 Expansin Gene Family AT3G29030 83.333 2.57e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01401 - K20628 gmx:100790170 206.068