Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01395 ATGGAGATAATAACAAACACCACCACCACCACCACCACCAACAACAACAACAATAGCACTCAAACAAGTGCAAAATCACCCGAACCCGAATCCGAAACACCGACCCGGATCCAACAACAACAACCCACAAACACAAACATCAACACAAACACAAACACAAAGCCTTTGTCTTTTTCAAATGGGGTTCTCAAGCGTCACCACCCTCACCACCACCACCACCACCACCACTACCCTCACACGGTGGCGGTGACTTATAAAGAATGTTTGAAGAACCACGTGGCGAATTTAGGTGGCCACGCCGTTGATGGTTGCGGCGAGTTCATGCCATCACCAAACACCACCGCCGACGACCCAAGTTCAATCAAATGCGCCGCTTGTGGCTGTCACCGGAATTTTCACCGCCGGGAACCAGAGGAACCAATAGCAACCCATGTTTTTGAATACCAACCCCATCACCGCCACCACCCTCTGCCGCCGTTTAACCGGAGTCCCAATTCAGCATCGCCGCCGCCGATTTCGTCTTACCCTTCAGCACCCCACATGCTCTTAGCACTCTCCGGCGCCGGTGGAGGTCTTTCAGTCCCACCGGAAAACACAGCAGCTCCGGCAAACCTCACCTCGCCTCCGGGAACCAACACAAGGAAGCGTTTCAGAACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCATGAGTTTGCTGAAAGAGTAGGCTGGAAGATGCAGAAGAGAGATGAAGAAATGGTTATGGAGTTTTGCAATGAGGTTGGTGTTGAAAAAGGGGTTCTTAAAGTTTGGATGCACAACAATAAGAACACTCTTGGGAAGAAAGATCATGTTAATTTCAACGCCGGCGCCGGTGGCCGTGAAACCAACGGTAACGCGAACGACGACAACAACCTCGTATCTCAGGATCCGAACCATTACGAGAATGATAGTGGGACTAACGTTGCTACTAATGGGTCGTCTTCTTCTTCTTGA 978 0.5061 MEIITNTTTTTTTNNNNNSTQTSAKSPEPESETPTRIQQQQPTNTNINTNTNTKPLSFSNGVLKRHHPHHHHHHHHYPHTVAVTYKECLKNHVANLGGHAVDGCGEFMPSPNTTADDPSSIKCAACGCHRNFHRREPEEPIATHVFEYQPHHRHHPLPPFNRSPNSASPPPISSYPSAPHMLLALSGAGGGLSVPPENTAAPANLTSPPGTNTRKRFRTKFTQEQKEKMHEFAERVGWKMQKRDEEMVMEFCNEVGVEKGVLKVWMHNNKNTLGKKDHVNFNAGAGGRETNGNANDDNNLVSQDPNHYENDSGTNVATNGSSSSS* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01395 325 MobiDBLite consensus disorder prediction 272 325 - -
Rops5g01395 325 MobiDBLite consensus disorder prediction 1 53 - -
Rops5g01395 325 SUPERFAMILY Homeodomain-like 208 275 IPR009057 -
Rops5g01395 325 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 136 IPR006456 -
Rops5g01395 325 FunFam Zinc-finger homeodomain protein 2 203 275 - -
Rops5g01395 325 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 84 136 IPR006456 -
Rops5g01395 325 Pfam ZF-HD protein dimerisation region 83 137 IPR006456 -
Rops5g01395 325 NCBIfam homeobox domain, ZF-HD class 214 271 IPR006455 -
Rops5g01395 325 MobiDBLite consensus disorder prediction 286 325 - -
Rops5g01395 325 Gene3D - 203 275 - -
Rops5g01395 325 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 43 273 - -
Rops5g01395 325 MobiDBLite consensus disorder prediction 151 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01395 Rops-Chr5 29066300 29067756 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01395 19 297 ZF-HD Transcription Factor Family AT3G28920 52.508 1.26e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops5g01395 ZF-HD_dimer 8.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01395 - - lja:Lj5g3v2258260.1 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01395 5 29066300 29067756 Rops8g00689 8 13850022 13851610 PCT