Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01394 ATGCCAGTTTCTGATTTCAATTCACCAAAAACTCTTTTTTTGAACAAAATCTTTGCAGGGTTTGAAGCAGAGGAAGGTAGAGAAGAATTTAAGTGCAACATGAGGAAGCGTCAAGTAGTTGTGAGAAGAGAGGAACCTCCTCAAAGAAGTGTTAGGAGTGTGAAATATGGTGAGTGTCAAAAGAATCATGCTGCTAATGTTGGAGGGTATGCTGTGGATGGTTGCAGAGAGTTCATGGCAAGTGGTGTGGAAGGAACGAGTGGTGCTCTCACTTGTGCTGCTTGTGGATGCCATAGAAGCTTTCACAAGAGAGAAGTGGAAACTGAAGTAGTGTGTGAGTGTTCATCGCCACCTTCAAATGGGACTTGA 369 0.4336 MPVSDFNSPKTLFLNKIFAGFEAEEGREEFKCNMRKRQVVVRREEPPQRSVRSVKYGECQKNHAANVGGYAVDGCREFMASGVEGTSGALTCAACGCHRSFHKREVETEVVCECSSPPSNGT* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01394 122 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 109 - -
Rops5g01394 122 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Rops5g01394 122 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Rops5g01394 122 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 106 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01394 Rops-Chr5 29029838 29030206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01394 34 121 Zinc finger-homeobox gene family AT3G28917 70.707 8.02e-43 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops5g01394 ZF-HD_dimer 3.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01394 - - aprc:113868039 195.282