Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01393 ATGGGAAGACCACCATGCTGTGATAAAGGTGTTAAGAAAGGACCTTGGACTCCTGAAGAGGATATCATATTGGTGTCTTATATACAAGAACATGGTCCTGGAAATTGGAAGGCTGTTCCCACCAATACTGGATTGTCAAGGTGCAGTAAGAGTTGCAGGCTTAGATGGACAAATTACCTGAGGCCAGGAATCAAAAGGGGTAACTTCACAGACCAAGAGGAGAAGATGATAATCCATCTTCAAGCCCTTTTAGGGAACAGATGGGCTGCTATAGCTGCTTACCTTCCACAGAGAACAGATAATGACATAAAAAACTATTGGAACACCTATTTGAAGAAGAAGCTCAAGAAAATGGAAACAGGTTCTGAAGGAAACTTGGGACATGCAGGACTCTCAGTTTCTCAATCAATGCCTAGAGGTCAATGGGAAAGAAGGCTCCAAACTGACATAGACAAGGCCAAGAGAGCTCTTAGTGAGGCTCTCACACCAGACAAAACATCTAGTTTATTACCTGAATCAAACCTTTCTAGTGATATCTCTTTATGTTCCAATAAACCAACACTATCTTTATGCTATGCTTCAAGTGCTGATAACATAGCTCGTTTGTTGAAGGGGTGGACGAAAAATACACCAAAGACTTCACGTGCTAATTCAGTTGTGACCCAAAATTCCTTCAACAACAACAACAACAACTTGGCTGGTGCTGGAACTGACACTGCTTCTAGTGAAGGAACCCCAAGTGGGACAAAAGGAAGCAGTGTTGAATTGTCTGAGACATTTGAGACCCTTTTTGGTTATGAGTCTTTGGATTCTTCAAATTCTGAGTTTTCTCAATCTTTGTCCCCTGAGGCTACTCTTTTCCAAGAAGAGAGTAAGCCAGAAATTGGAGCAGAAATGCCCTTTTCTTTGCTTGAGAAATGGCTTCTAGATGATGCTGGTTGCCAAGAGAAAGCTAGCTGCAGTGAAATTACATCTTCTGAAATTGCCGCTATGTTTTAG 999 0.4174 MGRPPCCDKGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLKKMETGSEGNLGHAGLSVSQSMPRGQWERRLQTDIDKAKRALSEALTPDKTSSLLPESNLSSDISLCSNKPTLSLCYASSADNIARLLKGWTKNTPKTSRANSVVTQNSFNNNNNNLAGAGTDTASSEGTPSGTKGSSVELSETFETLFGYESLDSSNSEFSQSLSPEATLFQEESKPEIGAEMPFSLLEKWLLDDAGCQEKASCSEITSSEIAAMF* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01393 332 FunFam Transcription factor MYB30 67 125 - -
Rops5g01393 332 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Rops5g01393 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Rops5g01393 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 233 - -
Rops5g01393 332 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Rops5g01393 332 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Rops5g01393 332 CDD SANT 68 111 IPR001005 -
Rops5g01393 332 Gene3D - 67 127 - -
Rops5g01393 332 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Rops5g01393 332 CDD SANT 15 60 IPR001005 -
Rops5g01393 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Rops5g01393 332 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Rops5g01393 332 Gene3D - 12 65 - -
Rops5g01393 332 FunFam MYB-related transcription factor 12 65 - -
Rops5g01393 332 SMART sant 12 62 IPR001005 -
Rops5g01393 332 SMART sant 65 113 IPR001005 -
Rops5g01393 332 MobiDBLite consensus disorder prediction 224 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01393 Rops-Chr5 28919582 28921211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01393 1 311 MYB Transcription Factor Family AT5G62470 50.276 3.14e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops5g01393 Myb_DNA-binding 5.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01393 K09422 - gmx:780542 458.373