Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01391 ATGGAAGAGTGGATTGAGATGGATAAGGTTGATGATGTGATGCCCGGTTTTCGTTTTCACCCCACAGATGAGGAGCTTGTTGAATATTACCTCAAGAGAAAAATCCAGCAGAAGCCTCTTCGTATTGAACTGATTAAGCAAGTGGATATTTACAAATATGATCCATGGGACCTTCCAAAGCTGGCGAGTACTAGGGAGAAAGAATGGTACTTCTACTGTCCAAGGGACAAAAAATACAGGAACAGTGAACGCCCAAATAGAGTGACAAGAGCTGGGTTTTGGAAGGCCACTGGAACTGACAGGCCTATATACTCCTCAGAAGGAAAATGCATTGGTTTGAAGAAGTCACTTGTGTTCTACAGAGGCAGAGCTGCCAAAGGCATGAAAACTGATTGGATGATGCATGAGTTTAGGCTACCTCGTATCTCAGGCTCGGCCTCTCCCAAAAAACTCTCAGACAAAAGCCTCCCTGCAAGTGAGTCATGGGCAATCTGTAGGATATTCAAGAAAACCAACTCTCTATCCATGGTACAGAAAGCTTTAACTCACCCTTGGATCTCTCAGTTACCAGGAAGCATGGTATCTGATTTACTCACACAGGGTACACACTGCAATCAGTTCTGTCCAGAGAACAATATCTCTTACACAACAACAGAAGTAGGATCATCAGCCATTCAATTTTGTGGTAACAAACAGGAGTTACACCAAGTCTCTAATCCCAACACCAACACCAACACCAATTTCTCAACTTCAGATATTCCCACTTATAAACCTATCAATAGCAACACAATTTCCAAGTCATCACAAATTCTTGTTTCAGATGGAGACCTTGCTGACGACCTCATCTTCTACACACTTGAAACCACAGGGCCCACCAAGTGCACAGTTGATGCTAGTTCCATGCTTTCAAACCCTGACTACATAGGTTTTGAAGAGCCAAACCAGCAATATAGTGGCTTCTCAATTAGTCTACCTCAGGATATGCAAGCAAACATGGGCACAGAAACAGGTTTAGAAGAACAAGGGTGGAGGAAGAATCTAGGTTCAGTGCAGCTTAACCAATGGGAAACAGCTGGAAGAACAATTGGATTTCCCTTCAATTTGCCTCCCAATGATGCTTGGAAGGCTACATGGGACCCACTCACTTGCCCCAGTGAGATATCCACAAACTATTCCACAAATAAATGTTACACTTGA 1197 0.4327 MEEWIEMDKVDDVMPGFRFHPTDEELVEYYLKRKIQQKPLRIELIKQVDIYKYDPWDLPKLASTREKEWYFYCPRDKKYRNSERPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPRISGSASPKKLSDKSLPASESWAICRIFKKTNSLSMVQKALTHPWISQLPGSMVSDLLTQGTHCNQFCPENNISYTTTEVGSSAIQFCGNKQELHQVSNPNTNTNTNFSTSDIPTYKPINSNTISKSSQILVSDGDLADDLIFYTLETTGPTKCTVDASSMLSNPDYIGFEEPNQQYSGFSISLPQDMQANMGTETGLEEQGWRKNLGSVQLNQWETAGRTIGFPFNLPPNDAWKATWDPLTCPSEISTNYSTNKCYT* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01391 398 Gene3D NAC domain 22 175 IPR036093 GO:0003677|GO:0006355
Rops5g01391 398 ProSiteProfiles NAC domain profile. 13 170 IPR003441 GO:0003677|GO:0006355
Rops5g01391 398 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Rops5g01391 398 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 242 - -
Rops5g01391 398 FunFam NAC domain-containing protein 35 22 173 - -
Rops5g01391 398 SUPERFAMILY NAC domain 12 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01391 Rops-Chr5 28895319 28898002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01391 9 347 NAC Transcription Factor Family AT1G26870 47.411 3.49e-94 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops5g01391 NAM 2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01391 - - mtr:25495303 560.066