Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01384 ATGAATGATATTATTATTATTATTATTATTCCCCCTACCATATCTTCCTCTTCTTCTTCTTCTTCTTCTTCAAACACTACCATGGCTTTCCCACCTTCTCACACTTTCATCTTTCAAACCCATGAAGATCGTGACCACCTTCGTTCAACTTCAACCTCTCTCAATGCTTTCCCCTCTTTTCCACCCCAACAACACTTTCAAGGTGGTGGTGCAGCTTTTATGATGAAGCGATCCGTGTCGTTTTCAGGCATAGAGAACAGGTGCGATGAAGTGCATGGAGACGATGATTTGTCAGATGATGGATCCCAGCTTGGTGAGAAAAAAAAGAGGTTGAGTTTGGAACAAGTGAAGGCCCTTGAGAAGAGTTTTGAGCTTGGGAACAAGCTTGAACCTGAAAGGAAAATGCAGCTTGCTAAGGCTTTGGGGTTGCAACCTAGACAGATTGCTATATGGTTCCAAAACAGAAGAGCAAGATGGAAAACCAAGCATCTTGAGAAGGAATATGAAGTGCTTAAGAAACAGTTTGAAGCTGTTAAGGCTGATAATGATAGCCTTAAGGCTCAGAACCAGAAGCTACATGCAGAGTTACAAACTCTAAAAAGTAGGGACTGCTGTGATACTGGAACAATTAGCCTCAAAAAAGAAACTGAGGGATCTTGGAGCAATGGAAGTGATAACAGCTCAGATATTAATTTGGATCTCACAAGAAAACCAGTTATGAACAGTCCAGTGTCTTCTCAGAATGGTAAAAGTCTTCTACCAAATTCCCTTAAGCCCACCAGCATAACTCAGCTTCTCCAATGCTCATCAAGATCAGATCTTCAAGATGAAAGCTTTTGCAACATGTTTCACAACATTGATGAGCAGCAGAATTTTTGGCCATGGCCTGAGCAGCACCATTTTCATTGA 909 0.4136 MNDIIIIIIIPPTISSSSSSSSSSNTTMAFPPSHTFIFQTHEDRDHLRSTSTSLNAFPSFPPQQHFQGGGAAFMMKRSVSFSGIENRCDEVHGDDDLSDDGSQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKHLEKEYEVLKKQFEAVKADNDSLKAQNQKLHAELQTLKSRDCCDTGTISLKKETEGSWSNGSDNSSDINLDLTRKPVMNSPVSSQNGKSLLPNSLKPTSITQLLQCSSRSDLQDESFCNMFHNIDEQQNFWPWPEQHHFH* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01384 302 Pfam Homeodomain 107 160 IPR001356 GO:0003677
Rops5g01384 302 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677
Rops5g01384 302 SUPERFAMILY Homeodomain-like 96 163 IPR009057 -
Rops5g01384 302 Coils Coil 154 202 - -
Rops5g01384 302 PRINTS Lambda-repressor HTH signature 133 142 IPR000047 GO:0003677
Rops5g01384 302 PRINTS Lambda-repressor HTH signature 142 158 IPR000047 GO:0003677
Rops5g01384 302 Gene3D - 99 178 - -
Rops5g01384 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 75 295 IPR045224 GO:0003700
Rops5g01384 302 SMART HOX_1 105 166 IPR001356 GO:0003677
Rops5g01384 302 CDD homeodomain 107 163 IPR001356 GO:0003677
Rops5g01384 302 Pfam Homeobox associated leucine zipper 162 201 IPR003106 GO:0006355|GO:0043565
Rops5g01384 302 FunFam Homeobox-leucine zipper protein ATHB-13 99 166 - -
Rops5g01384 302 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01384 Rops-Chr5 28691555 28693996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01384 28 297 Homeobox Transcription Factor Family AT5G15150 50.000 1.08e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops5g01384 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01384 K09338 - gmx:100790803 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01384 5 28691555 28693996 Rops8g00709 8 14473539 14474922 PCT