Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01383 ATGGCAAGTCCTGTTGGTAAGATGAATGTGAAAAATTCCAAGGCAACAAACAACAAAAGTGCCAAAGATGAAGGTTCAAGGTTTTGGACGAAACTCAAGGTTTTTTTAAGTTGCATGGCTTTGAGCTCCAAAACGGAAGAAGGCTCCTCTAGTGGCAAAAACAGACGAGATGGAAGTAAATCTCCAAAGGGTAATAATAGAGACCAAGCACGTTCTCCAGCATCCTCATCCAAGAGCAAATCAGGCACTGTTAGATCTACTATAAGTGATGAAATAAAATATCAACCCCATCTTAGTATCTTCACCTTTCATGAGCTTAAGTTGGCTACAAAGAATTTCAAACGTGAGAATTTTCTTGGTGAGGGGGGTTTTGGTATTGTATTCAAAGGCTGGATCAATGAGAATGGAACCTCCCCAGCAAGACCTGGAACAGGGATTCCAGTTGCAGTGAAGACTCTTAAGAAAGATGGAAATCAGGGCGAGAAGGAATGGGTTGCTGAAATTAATCACCTTGGTGCTCTCCATCACCCAAATCTAGTTAGATTGGTTGGATTTTGCACAGAAGGTGAAGATAGGCTACTTGTATACGAGTTTATGCCTCGAGGAAGCTTAGAGCATCATCTCTTTAGGAGAGGAGCTTTGCCCCTTCCATGGAATGTCAGAATGAAAATTATGCTTGGTGCTGCAAGGGGCCTTGCATTTCTCCATGAGGAAGCTCCAAATCCAATGATATATAGAGACTTCAAAACCTCTAATATCTTATTGGATGTGGACTTCAATGCAAAACTTTCTGATTTTGGACTTGTTAAAGATGCTCCAATAGACAAAACTCATGTATCAACTAGAATAATGGGAACACAAGGCTATGCAGCCCCTGAGTATGTGATGACAGGACGCCTTTCTTCCAAGAGTGATGTGTATAGCTTTGGGGTGGTTCTCCTTGAGGTGTTGACTGGTAGAAGAGTCATGGATAAAAGAAGGCCTCCTTGTGAGCAATACTTGGTGGAATGGGCAAGGCCTTTTATTAAACATGGAGGGGGATTCTACCAACTCATGGATCCTAGGCTCCAAGGACAATTCCCACCAAGAGGTGCTCACAAGGCAACTAGATTGGCTGCTCACTGCCTTTGTCGTGACAAAAAAGCAAGACCCCTAATGAGTGAAGTGGTTCAAGTGCTGGAAACTGTGCTTGATCACAATGAGATAGCTAGTTCCTCATCATCTTCACCCTCCCCCTCATTTAAGGGCTTTCATGTAGGCTCATCATCAAGGAATTCACCAAGTAACCTTCAAGCCTCCCCATGGAGATTTACCCCTCCTATTCCTTCACCTAAATCTAGTAGTGGAAGGCCTTAA 1356 0.4307 MASPVGKMNVKNSKATNNKSAKDEGSRFWTKLKVFLSCMALSSKTEEGSSSGKNRRDGSKSPKGNNRDQARSPASSSKSKSGTVRSTISDEIKYQPHLSIFTFHELKLATKNFKRENFLGEGGFGIVFKGWINENGTSPARPGTGIPVAVKTLKKDGNQGEKEWVAEINHLGALHHPNLVRLVGFCTEGEDRLLVYEFMPRGSLEHHLFRRGALPLPWNVRMKIMLGAARGLAFLHEEAPNPMIYRDFKTSNILLDVDFNAKLSDFGLVKDAPIDKTHVSTRIMGTQGYAAPEYVMTGRLSSKSDVYSFGVVLLEVLTGRRVMDKRRPPCEQYLVEWARPFIKHGGGFYQLMDPRLQGQFPPRGAHKATRLAAHCLCRDKKARPLMSEVVQVLETVLDHNEIASSSSSSPSPSFKGFHVGSSSRNSPSNLQASPWRFTPPIPSPKSSSGRP* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01383 451 Gene3D Phosphorylase Kinase; domain 1 98 198 - -
Rops5g01383 451 Gene3D Transferase(Phosphotransferase) domain 1 199 412 - -
Rops5g01383 451 PANTHER OS01G0588500 PROTEIN-RELATED 70 396 - -
Rops5g01383 451 MobiDBLite consensus disorder prediction 42 87 - -
Rops5g01383 451 MobiDBLite consensus disorder prediction 65 87 - -
Rops5g01383 451 FunFam Serine/threonine-protein kinase BIK1 79 198 - -
Rops5g01383 451 SUPERFAMILY Protein kinase-like (PK-like) 96 412 IPR011009 -
Rops5g01383 451 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01383 451 MobiDBLite consensus disorder prediction 49 64 - -
Rops5g01383 451 MobiDBLite consensus disorder prediction 402 436 - -
Rops5g01383 451 MobiDBLite consensus disorder prediction 402 451 - -
Rops5g01383 451 MobiDBLite consensus disorder prediction 437 451 - -
Rops5g01383 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Rops5g01383 451 ProSitePatterns Protein kinases ATP-binding region signature. 119 151 IPR017441 GO:0005524
Rops5g01383 451 CDD STKc_IRAK 119 394 - -
Rops5g01383 451 FunFam Serine/threonine-protein kinase PBS1 199 410 - -
Rops5g01383 451 Pfam Protein tyrosine and serine/threonine kinase 116 393 IPR001245 GO:0004672|GO:0006468
Rops5g01383 451 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01383 Rops-Chr5 28604552 28608274 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01383 49 393 Glycoside Hydrolase AT3G07070 48.997 7.95e-112 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops5g01383 PK_Tyr_Ser-Thr 6.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01383 - - vvi:100853083 476.863