Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01380 ATGGCAAGTCCTGTTGGTGTTATGATTGGAGCTAAGAAAGTGAGAAAATCCAACAAAGATGCAAAATGTGAAGGTTCAAGTTTCTGGAGGAAACTCATGATTTTTGGATGTTGCATCACTTTAAGGTCCAAATCAGAGGGATCCTCCAGTGGAAGTAAATCTACAAAGGACAATATTAGAGACCTAGCAGATGATCCAGCAGCATCCTTATCCAACAACAATTCAGGAACTATTAGATCTACTTCCAACATATGCAAGGAAATAAAATATCAATCCCATCTTCGGAACTTCACCTTTCAAGAACTTAAGTTGGCAACAGGGAATTTCAAGCGTGAGAATTTTCTTGGTGAAGGAGGGTTTGGTACTGTATTCAAAGGTTCGATCAATGGAAACTCCAATGCAAGACCTGGAATGGGGATTCCAGTTGCAGTGAAGACTCTTAAGAAAGATGGAAATCAGGGCCATAAGGAATGGGTTGCTGAAATTATTCATCTTGGTGCTCTCCATCACCCAAATATAGTTAAATTGTTTGGTTTTTGCACAGAAGGTGAAGATAAGCCACTTGTATACGAGTTTATGCCTCAAGGAAGCTTAGAGAATCATCTGTTTAAGAGTGGAGCTTTGCCCCTTTCGTGGAATTTCAGAATGAAAATCATGCTTGGTGCTGCAAAGGGTCTTGCATTTCTACATGAGGAAGCTGAAAAGCCAATGATACATCGAGATTTCAAAACTTCTAATATCCTATTGGACAAGGACTACAATGCAAAACTTTCTGATTTTGGGCTTGTTAAAGAAGCCCCCGTGGATAGAACTCATGTGTCAACTCAAGTGATGGGAACGAAAGGCTATGCAGCCCCTGAGTATGTGATGACAGGACACCTTACTACCAAGAGTGATGTGTATAGCTTTGGGGTGGTTCTCCTTGAGGTGTTGACGGGAAGAAGAGTCCTGGACAGGCCTCACCCAGAGCAATGCTTGGTGAATTGGGCAATGTCTCAAATCAAGCATGAAGGGGGGTTCCGCACAATGATGGATCCTAGACTTCAAGGTCAATTCTCACAAGAAGGTGCTGAAAGGGCAATGAGGTTGGCTGTTCATTGCCTTTCCCATGATCATGAAGCAAGACCCGTGATGAGTGAAGTGGTTCAAGTGCTGGAGTCAATGCTTGATCACAATGACATGGCTAGTTCTTCCTCTTCACCCTCATTTCAGGGCTTTCATGTAGGCTCATCATCAAGGAACGCACCAATTCACTTTGAAACCTCCGCATGCAGCCATACCCCTCCTGTTTCTTCAACCAAAACTAGTGGTGGAAGGCCTTGA 1323 0.4308 MASPVGVMIGAKKVRKSNKDAKCEGSSFWRKLMIFGCCITLRSKSEGSSSGSKSTKDNIRDLADDPAASLSNNNSGTIRSTSNICKEIKYQSHLRNFTFQELKLATGNFKRENFLGEGGFGTVFKGSINGNSNARPGMGIPVAVKTLKKDGNQGHKEWVAEIIHLGALHHPNIVKLFGFCTEGEDKPLVYEFMPQGSLENHLFKSGALPLSWNFRMKIMLGAAKGLAFLHEEAEKPMIHRDFKTSNILLDKDYNAKLSDFGLVKEAPVDRTHVSTQVMGTKGYAAPEYVMTGHLTTKSDVYSFGVVLLEVLTGRRVLDRPHPEQCLVNWAMSQIKHEGGFRTMMDPRLQGQFSQEGAERAMRLAVHCLSHDHEARPVMSEVVQVLESMLDHNDMASSSSSPSFQGFHVGSSSRNAPIHFETSACSHTPPVSSTKTSGGRP* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01380 440 CDD STKc_IRAK 115 388 - -
Rops5g01380 440 SUPERFAMILY Protein kinase-like (PK-like) 84 386 IPR011009 -
Rops5g01380 440 ProSiteProfiles Protein kinase domain profile. 109 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01380 440 MobiDBLite consensus disorder prediction 420 440 - -
Rops5g01380 440 Gene3D Phosphorylase Kinase; domain 1 89 192 - -
Rops5g01380 440 Gene3D Transferase(Phosphotransferase) domain 1 193 407 - -
Rops5g01380 440 ProSitePatterns Protein kinases ATP-binding region signature. 115 145 IPR017441 GO:0005524
Rops5g01380 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Rops5g01380 440 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 193 398 - -
Rops5g01380 440 Pfam Protein tyrosine and serine/threonine kinase 112 385 IPR001245 GO:0004672|GO:0006468
Rops5g01380 440 FunFam Serine/threonine-protein kinase BIK1 76 192 - -
Rops5g01380 440 MobiDBLite consensus disorder prediction 44 74 - -
Rops5g01380 440 PANTHER OS01G0588500 PROTEIN-RELATED 57 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01380 Rops-Chr5 28541229 28543817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01380 50 385 Glycoside Hydrolase AT3G07070 46.356 2.89e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops5g01380 PK_Tyr_Ser-Thr 3.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01380 - - cave:132183248 446.817