Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01378 ATGTCAAAAATATCTAGTCTTTGTGATAAAGAGATAGAAGTGAAGAGAGTTACTTCCATTTGCTCTGAAGAGAACTGTTGTACTGAAGAGGGTAGAAAGGAAGATGAACTTAAATTTACTAAAGCTGAGATGATTGAGGTGAAAGAAGAAAATGAAAGATTGAAGATGATGCTAGAGCAAGTTGAAAAGGCTTACCACTCTCTTCAACTGCGTTTCTTTGACATCCTTCAGAGAGAAACTTCCAAGAAAGGTATGGAAGATTCAGCTCCTTCCCCTAATGAAGTGGAAGGATCTAAGCTTGTGTCACTTAGTCTTGGAACAAGTCCAAGGAAACCTAAAGAGGATGGAACAATTGGTAACTCTAGCAAACTTAAGAAAAATGAAGATCTTGAAGCCAACCTTACCCTTGGTTTAGACTCCAAAAGTCTGTCTTCAATGGAGCTAGTTTCTGATCTTAGCCCCATGAACAACTTAGACGAACTAGAGGAAGCAAATGCAAGGGGAACATGTTCAATAAATAAATCAGAAAGAACCAGAGATGGTGGTGATGAGATTTCAGAGCTAATACCTACCAAGAGAGCTAGAGTTTGTGTGAGAGCTAGATGTGATACTCCCATGATGAATGATGGATGCCAGTGGAGAAAATATGGACAGAAGATAGCAAAAGAAAATCCATGTCCAAGGGCATACTATCGTTGCACAGTTGCTCCAGCATGCCCAGTCAAGAAACAGGTGCAAAGATGTGCTGAGGACATGTCCATCTTAATCACCACATATGAAGGAATCCACAACCACCCTCTTTCAGTTTCAGCCTCAGCCATGGCTTCCACCACTTCTGCTGCTGTTTCCATGCTATTGTCAGGTTCTTCAATATCTCAGCCTACAGGTCACAGTTCTCCATCTCTTGGAAATGCTCCTACAGTTTTCAGTGGTCTGAATTTCAGTCCTTTTGATCAATCAAGAGCAACACAGGCCTTTTTACCAACCCATACTTCACATTTGTTCCCAACAATCACTCTGGACTTGACTTCTGCTTCATCCTCCTCGTCAATTAATACCCCTTATTTACCTTCAAGCTTTGCTTCAAATCCAAGTTCCTCTCCATTAAGTCTAAGCTTTTGCTCCCAAAAACACAACATCCCACCATCCTTTTGGGGCAAAGGATTTCCTAACAATGACAATGCCACTGTACCTATTGACAAAACAAACATCAGGCCAGTTAATATGGTAAACCAATTTCAAGAACATCTCTACCAACACTGCATCAAGAACCAAACTGTTTTCAAGGAGGCTTTGGCTGAAAAACTAACCAAAGTAATCAGTACAGAACCAAGTCTTCAATCTATAATAGCTGCTGCAGTTTCATCTATAGGGGGACAAGGATCAACCAAAGGGAACCAGTGTGGAGGAGAGATTTTAGGTTCAGGTTTGAGCTTGAAACTGGGGGAGCATCCTCAACTTACTTCTTTCAATCCCTTGAACCAGAATGGGAAAGGATGCTTAAATGGATACTTCAACATATCATCATCTTCAAGTTGTGAGGATGGAAACTCCATGTTTCTCCAACTTCCAAGGCCATTTTCTCTCTCCAAGAGTAGCACAACTCCTTCTAATATTGATCACATCAACCATTGTGTTTCAGAAATCAACTGA 1653 0.4083 MSKISSLCDKEIEVKRVTSICSEENCCTEEGRKEDELKFTKAEMIEVKEENERLKMMLEQVEKAYHSLQLRFFDILQRETSKKGMEDSAPSPNEVEGSKLVSLSLGTSPRKPKEDGTIGNSSKLKKNEDLEANLTLGLDSKSLSSMELVSDLSPMNNLDELEEANARGTCSINKSERTRDGGDEISELIPTKRARVCVRARCDTPMMNDGCQWRKYGQKIAKENPCPRAYYRCTVAPACPVKKQVQRCAEDMSILITTYEGIHNHPLSVSASAMASTTSAAVSMLLSGSSISQPTGHSSPSLGNAPTVFSGLNFSPFDQSRATQAFLPTHTSHLFPTITLDLTSASSSSSINTPYLPSSFASNPSSSPLSLSFCSQKHNIPPSFWGKGFPNNDNATVPIDKTNIRPVNMVNQFQEHLYQHCIKNQTVFKEALAEKLTKVISTEPSLQSIIAAAVSSIGGQGSTKGNQCGGEILGSGLSLKLGEHPQLTSFNPLNQNGKGCLNGYFNISSSSSCEDGNSMFLQLPRPFSLSKSSTTPSNIDHINHCVSEIN* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01378 550 Gene3D WRKY domain 194 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops5g01378 550 MobiDBLite consensus disorder prediction 83 124 - -
Rops5g01378 550 SUPERFAMILY WRKY DNA-binding domain 200 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops5g01378 550 Pfam WRKY DNA -binding domain 208 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops5g01378 550 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 21 461 IPR044810 GO:0003700
Rops5g01378 550 FunFam probable WRKY transcription factor 31 192 269 - -
Rops5g01378 550 Coils Coil 37 71 - -
Rops5g01378 550 ProSiteProfiles WRKY domain profile. 202 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops5g01378 550 SMART WRKY_cls 207 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01378 Rops-Chr5 28513713 28516918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01378 44 532 WRKY Transcription Factor Family AT5G15130 42.669 2.75e-79 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops5g01378 WRKY 4.4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01378 - - gmx:100819296 676.011