Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01374 ATGGAAATAGTGATAAAGAATGAAGAGAACAAGAGGAGGAGCTGGATGTCCATGGCAGAAGGTGAGTTTCAACTAGCTCAGTGTGCCAAAAGACGACGAAGAGAGCCTGCAGTCGCTGCACTTACTTGTGAGGATAACCAAAGTCAGAAGCAACAGTTGCTGCCACAGCAACAAGTTGATCAAAATTCCACAACCAGCACCACAAAGAGAAGTTCAAGATTTCGGGGTGTCAGCAGACATAGATGGACGGGTCGATTTGAAGCTCACTTATGGGACAAGCTTTCTTGGAACATAGCCCAAAAGAAGAAAGGGAAACAAGGTAAGAAATGTGTTCTCATGTTCGAACTTTGCCTTTGGAACGTGGATTGGAATTGGCTACTGGGACCAACAGTTTACCTTGGGGCTTACGATGAAGAAGAATCAGCAGCCAGAGCATATGATTTAGCTGCACTTAAGTACTGGGGAACATCAACTTTCACCAATTTCCCTATCTCAGATTACGAGAAACAGATAGAGACAATGCAAACTATGACAAAAGAGGAGTACTTGGCCACTTTAAGGAGAAAGAGTAGTGGCTTTTCAAGAGGCGCATCAAAGTACAGGGGTGTAGCAAGGCACCACCACAATGGTAGATGGGAAGCAAGGATCGGGAGGGTTTTTGGAAACAAATATCTCTACCTTGGCACCTATAGCACCCAAGAGGAAGCTGCTTGTGCTTATGACATGGCGGCCATTGAGTACAGAGGGATCCATGCTGTAACCAATTTCGATTTGCGTACTTACATAAGACGGGTAAGTCCTTCAGCAAGAAATATCTCAGAAACAAAACTTGAATCAAAGGTAGCATCAGAGTCTCAGATGATGGCATCCCAATCTAAGACTTCTCCAATCGAGGGGTCCAAATCCTTGGCCCTTCACAGCAGTATTTACAATTCAGATTATCTGGATTCCCCTCAAAAGCATGAAATCTCTGAAAACAAAACATACCAAATCTCTAGCACTAAGTCATCTTCTCCAACTGCACTTGGGCTCCTACTCCGCTCTACAGTATTTAGAGAATTAGTTGAAAAGAATTTGAACATACCTGGAGATGAAACTGACTGGGAGGACAATAAGGATCAACAGCCACAGACAGCTAGTGATGATGAGTTGGTTGGGATCTTTTATGATGGAAATGACAATATCCCCTTTCTGTGA 1197 0.4361 MEIVIKNEENKRRSWMSMAEGEFQLAQCAKRRRREPAVAALTCEDNQSQKQQLLPQQQVDQNSTTSTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNIAQKKKGKQGKKCVLMFELCLWNVDWNWLLGPTVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYEKQIETMQTMTKEEYLATLRRKSSGFSRGASKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAACAYDMAAIEYRGIHAVTNFDLRTYIRRVSPSARNISETKLESKVASESQMMASQSKTSPIEGSKSLALHSSIYNSDYLDSPQKHEISENKTYQISSTKSSSPTALGLLLRSTVFRELVEKNLNIPGDETDWEDNKDQQPQTASDDELVGIFYDGNDNIPFL* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01374 398 SMART rav1_2 199 263 IPR001471 GO:0003700|GO:0006355
Rops5g01374 398 SMART rav1_2 73 169 IPR001471 GO:0003700|GO:0006355
Rops5g01374 398 MobiDBLite consensus disorder prediction 49 72 - -
Rops5g01374 398 MobiDBLite consensus disorder prediction 361 383 - -
Rops5g01374 398 CDD AP2 198 257 IPR001471 GO:0003700|GO:0006355
Rops5g01374 398 Gene3D AP2/ERF domain 72 165 IPR036955 GO:0003700|GO:0006355
Rops5g01374 398 Gene3D AP2/ERF domain 198 259 IPR036955 GO:0003700|GO:0006355
Rops5g01374 398 SUPERFAMILY DNA-binding domain 127 165 IPR016177 GO:0003677
Rops5g01374 398 FunFam AP2-like ethylene-responsive transcription factor 198 259 - -
Rops5g01374 398 CDD AP2 74 165 IPR001471 GO:0003700|GO:0006355
Rops5g01374 398 MobiDBLite consensus disorder prediction 361 377 - -
Rops5g01374 398 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 51 319 - -
Rops5g01374 398 ProSiteProfiles AP2/ERF domain profile. 199 257 IPR001471 GO:0003700|GO:0006355
Rops5g01374 398 SUPERFAMILY DNA-binding domain 198 258 IPR016177 GO:0003677
Rops5g01374 398 ProSiteProfiles AP2/ERF domain profile. 73 163 IPR001471 GO:0003700|GO:0006355
Rops5g01374 398 MobiDBLite consensus disorder prediction 49 76 - -
Rops5g01374 398 Pfam AP2 domain 198 249 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01374 Rops-Chr5 28443659 28445615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01374 47 269 AP2-EREBP Transcription Factor Family AT1G72570 54.464 5.14e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops5g01374 AP2 6.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01374 - - ahf:112716370 546.584