Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01354 ATGGGGTTTGGGAATAAGGCTATTCAGGCAGGGAGTTTGGATGTTGACAAGTCAAAGGGAAGGAAGAACAAGGTAGATGGTGCAAAAAAGGAGAGAAGATGGTGTTTTAGATTTGGTTTCTTTGGGAGCTGCATACCTTCAAGATCAAAAGTTGATAACTCCTTAAGTGGTACTAATGCCAATAATGGTGACAATACCAAGTCAGTGATAACTGAACCAGCGGAAAACAAATCTGCATTTGAAAAAAGCACAAAGGAAACTGTTGCTCCTCCAGAGTCCTCTACATCAACCAGTAATGCAGAAAGTATCCCTTCCACTCCAAAATTCAGTGAGGAGTTGAAGGTTGCTTCTTGTTTAAGAAAATTCACATTCAATGGACTTAAGGTGGCAACAAGAAATTTCAAACCAGAGAGTCTTCTTGGTGAGGGAGGGTTTGGTTGTGTCTTCAAGGGTTGGATTGAGGAGAATGGAACTGCACCTGTGAAACCTGGTACCGGGCTTACAGTTGCAGTCAAGATCCTCAACCACAATGGACATCAGGGTCACAAAGAGTGGCTTGCTGAATTAAACTATCTCGGTGATCTTGTCCATCCTAACCTTGTTAAATTGATTGGTTTCTGTATTGAAGATGACCAAAGGTTATTGGTTTATGAGTTTATGCCCCGAGGCAGTTTGGAGAACCACCTCTTTAGAAAAGGGCCCCTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGCCTTGCTTTTCTCCATGAAGAAGCTCAAAGACCCATAATATATCGTGATTTCAAAACATCTAATATTCTATTAGATGCGGAATACAACGCAAAGCTTTCTGATTTTGGACTCGCCAAAGATGGTCCTGAGGGGGAAAAGACACATGTATCAACAAGAGTCATGGGAACATATGGTTATGCTGCTCCAGAATATGTGATGACTGGACATTTATCATCAAAAAGCGATGTCTACAGCTTTGGAGTAGTGCTACTTGAAATGCTCACCGGCCGGCGATCTATAGATAAAAAAAGACCAAATGGGGAACACAATCTGGTGGAGTGGGCAAGACCTGTACTTGGTGACAGGAGGATGTTCTACAGGATAATCGATCCCCGCCTTGAAGGTCACTTCTCAGTTAAAGGGGCACAGAAAGCTGCTCAGCTTGCTGGTCAATGCCTTAGCCGTGATCCAAAAGCTAGACCTTTGATGAGTGAAGTTGTTCAAGCTTTAAAACCTTTGCCAAACCTTAAGGATATGGCTATCTCATCTTATCACTTCCAGATTGCAAGAGTAGATAGAACCATGTCCATGCCAAATCATAAAAATGGTATTAAAACACAGTTAGTATCTTTACCAAAGAAGGGTCAACCTGCAAGGACCTTGTCAAGTCCACATTGTCCAAATGGTTCTCCATATCCTCGTTATAGCAAGTCTCCAAAACCTATTGGGTAA 1467 0.4226 MGFGNKAIQAGSLDVDKSKGRKNKVDGAKKERRWCFRFGFFGSCIPSRSKVDNSLSGTNANNGDNTKSVITEPAENKSAFEKSTKETVAPPESSTSTSNAESIPSTPKFSEELKVASCLRKFTFNGLKVATRNFKPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKILNHNGHQGHKEWLAELNYLGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRKGPLPLPWSIRMKIALGAAKGLAFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHVSTRVMGTYGYAAPEYVMTGHLSSKSDVYSFGVVLLEMLTGRRSIDKKRPNGEHNLVEWARPVLGDRRMFYRIIDPRLEGHFSVKGAQKAAQLAGQCLSRDPKARPLMSEVVQALKPLPNLKDMAISSYHFQIARVDRTMSMPNHKNGIKTQLVSLPKKGQPARTLSSPHCPNGSPYPRYSKSPKPIG* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01354 488 Pfam Protein kinase domain 136 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01354 488 CDD STKc_IRAK 140 418 - -
Rops5g01354 488 PANTHER OS01G0588500 PROTEIN-RELATED 92 418 - -
Rops5g01354 488 ProSitePatterns Protein kinases ATP-binding region signature. 140 172 IPR017441 GO:0005524
Rops5g01354 488 ProSiteProfiles Protein kinase domain profile. 134 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01354 488 MobiDBLite consensus disorder prediction 457 488 - -
Rops5g01354 488 SUPERFAMILY Protein kinase-like (PK-like) 109 415 IPR011009 -
Rops5g01354 488 FunFam Probable serine/threonine-protein kinase PBL8 220 434 - -
Rops5g01354 488 MobiDBLite consensus disorder prediction 53 73 - -
Rops5g01354 488 Gene3D Transferase(Phosphotransferase) domain 1 220 436 - -
Rops5g01354 488 Gene3D Phosphorylase Kinase; domain 1 118 219 - -
Rops5g01354 488 MobiDBLite consensus disorder prediction 53 106 - -
Rops5g01354 488 MobiDBLite consensus disorder prediction 87 106 - -
Rops5g01354 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Rops5g01354 488 FunFam Serine/threonine-protein kinase BIK1 101 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01354 Rops-Chr5 28221241 28226427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01354 120 431 Glycoside Hydrolase AT3G07070 55.414 2.63e-115 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops5g01354 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01354 - - gmx:100499647 844.728