LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops5g01352	ATGGCTGAGAAAGCAGACGCCATGCATGCTGTTTTGAAGGAAGCTGTGGATTTGGAAAACGTGCCGCTTGAGGAGGTGTTTCAGACTTTGAGGTGTGATTCAAATGGACTCACAACAGAGGCTGCTCAAGAGAGGTTGGCCATCTTTGGCCACAACAAACTTGAGGAGAAGAAGGAGAGCAAGCTTTTGAAGTTTTTGGGATTTATGTGGAATCCTCTTTCATGGGTCATGGAAGCTGCAGCAATCATGGCTATTGCTTTGGCCAATGGAGGAGGCAAACCACCTGATTGGCAAGACTTTGTTGGGATTATCACACTCCTTCTTATCAATTCAACAATAAGTTTCATAGAGGAGAACAATGCTGGTAATGCGGCTGCTGCTCTCATGGCTCGCCTAGCACTCAAAGCTAAGGTCCTTCGAGATGGGAAATGGATCGAGGAAGATGCTAGTATTCTTGTTCCAGGTGATATAATTAGTGTTAAGCTAGGGGATATTATCCCTGCAGATGCACGTTTACTTGAAGGTGATCCATTGAAGATTGATCAGTCTTCACTTACCGGCGAGTCTCTTCCAGTCACGAAAGGCCCTGGTGATAGTGTTTATTCAGGCTCTACATGCAAGCAGGGAGAGATTGAAGCAGTTGTTATTGCAACAGGAGTTCATACCTTCTTTGGCAAGGCTGCTCATCTTGTGGACTCCACGAATCAAGTGGGGCATTTTCAGAAGGTGTTAACTGCTATTGGAAACTTTTGCATATGTTCAATAGCTGTGGGAATGATAGTAGAGATCATCATCATGTACCCAATTCAACACCGGAAATATCGTCCTGGGATTGACAATCTGCTTGTGCTTCTTATTGGAGGAATTCCTATAGCCATGCCTACCGTTTTGTCAGTGACAATGGCAATTGGATCCCACCGCTTATCTCAGCAGGGTGCTATTACTAAAAGAATGACAGCAATAGAAGAGATGGCCGGTATGGATGTATTGTGCAGTGACAAAACTGGAACTTTGACTTTGAATAAACTAACAGTTGACAAGAATCTTATTGAGGTTTTTGCTAAAGGAGTTGACACAGATACTGTTGTTCTCATGGCTGCTCGAGCTTCCAGAGTGGAAAACCAAGATGCTATAGATGCTGCTATTGTAGGGATGCTGGGCGATCCAAAAGAGGCAAGGGCTGGTATTCAAGAGGTTCACTTCCTTCCCTTCAATCCAACTGACAAGCGGACTGCTCTGACTTATATTGACAGTGAAGGTAAAATGCATCGCGTCAGCAAAGGTGCACCAGAACAGATTTTAAATCTTGCACGTAATAAATCAGAGATAGAACGTAGAGTTCATGCCGTCATTGATAAGTTTGCAGAGCGAGGATTGCGGTCTCTTGCAGTAGCTTACCAGGAAGTTCCCGATGGAAGGAAAGAAAGCCAAGGAGGGCCTTGGCAATTTATTGGCCTCATGCCTCTATTTGACCCACCTAGACATGATAGTGCAGAGACAATACGAAGGGCATTAAATCTTGGAGTAAATGTTAAAATGATAACAGGTGATCAACTAGCAATAGGAAAAGAAACAGGACGCCGTCTTGGGATGGGAACCAACATGTACCCTTCATCGGCTTTATTGGGCCAAAACAAGGATGAAGCAATCGCTTCCTTGCCAGTTGATGAATTGATTGAAAAAGCTGATGGATTTGCTGGTGTTTTTCCCGAGCACAAATATGAGATTGTAAAACGTCTACAAGCTAGGAAACACATATGCGGAATGACTGGTGATGGGGTTAATGATGCACCTGCTCTTAAAAAAGCAGATATTGGAATAGCTGTTGCTGATGCAACTGATGCAGCTTGTAGTGCTTCTGACATTGTTCTGACTGAACCAGGTCTCAGTGTTATCATTAGTGCTGTACTGACAAGTCGCGCAATATTCCAGAGGATGAAGAATTATACAATCTATGCAGTTTCCATCACAATCCGTATTGTGCTTGGTTTCATGTTACTGGCCCTCATATGGCAATTTGATTTTCCACCATTCATGGTGCTAATTATCGCTATTCTTAATGATGGTACCATTATGACAATATCCAAGGACAGGGTAAAACCATCTCCATATCCAGATAGCTGGAAACTGGCAGAGATCTTCACCACTGGAGTAATTCTTGGTGGTTATTTGGCTATGATGACAGTTATTTTCTTTTGGGCAGCATATAAAACAGATTTTTTCCCTAGCACATTTGGGGTCTCAAGTCTTCAGAAAAAGGATGAGGATGACATTAGAAAGCTTGCCTCAGCAATATACCTACAAGTTAGTACAATTAGCCAGGCCCTCATATTTGTTACACGGTCACGGAGTTGGTCTTTTGTTGAGCGTCCGGGTTTGTTACTTGTAGCGGCTTTTGTTATTGCCCAGCTGATAGCTACACTGATTGCAGTTTATGCAAATTGGAGTTTTGCTGCAATTGAAGGGATTGGATGGGGTTGGGCTGGTGTTGTTTGGCTTTATAACCTCATCTTTTATATCCCACTTGATTTTATCAAATGCATAGTTAGATATGCCTTGAGTGGAAGGGCTTGGGATCTTGTCATTGAACAAAGGATTGCTTTCACAAGGAAAAAAGATTTTGGAATGGAAGAACGTGAACTTAAATGGGCACATGCACAGAGAACACTTCATGGCCTTCACCCTCCAGAGACCAAGATGTTCAATGAACGTACAAGTTACACAGAACTTACTCAGATGGCTGAAGAAGCTAAAAGAAGAGCTGAGATTGCAAGACTGAGAGAACTGAATACATTGAAGGGCCATGTTGAGTCAGTGGTTAGACTGAAGGGCCTTGACATTGACACAATACAACAAGCATACACTGTCTAA	2871	0.4295	MAEKADAMHAVLKEAVDLENVPLEEVFQTLRCDSNGLTTEAAQERLAIFGHNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMARLALKAKVLRDGKWIEEDASILVPGDIISVKLGDIIPADARLLEGDPLKIDQSSLTGESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIVEIIIMYPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDTDTVVLMAARASRVENQDAIDAAIVGMLGDPKEARAGIQEVHFLPFNPTDKRTALTYIDSEGKMHRVSKGAPEQILNLARNKSEIERRVHAVIDKFAERGLRSLAVAYQEVPDGRKESQGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDEAIASLPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAACSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPYPDSWKLAEIFTTGVILGGYLAMMTVIFFWAAYKTDFFPSTFGVSSLQKKDEDDIRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVAAFVIAQLIATLIAVYANWSFAAIEGIGWGWAGVVWLYNLIFYIPLDFIKCIVRYALSGRAWDLVIEQRIAFTRKKDFGMEERELKWAHAQRTLHGLHPPETKMFNERTSYTELTQMAEEAKRRAEIARLRELNTLKGHVESVVRLKGLDIDTIQQAYTV*	957

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops5g01352	956	ProSitePatterns	E1-E2 ATPases phosphorylation site.	333	339	IPR018303	-
	Rops5g01352	956	Gene3D	-	343	490	IPR023299	GO:0000166
	Rops5g01352	956	CDD	P-type_ATPase_H	36	846	IPR006534	GO:0008553\|GO:0016020\|GO:0120029
	Rops5g01352	956	Coils	Coil	907	927	-	-
	Rops5g01352	956	FunFam	Plasma membrane ATPase	343	490	-	-
	Rops5g01352	956	Pfam	E1-E2 ATPase	134	310	-	-
	Rops5g01352	956	Gene3D	-	134	218	-	-
	Rops5g01352	956	PRINTS	H+-transporting ATPase (proton pump) signature	590	606	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Rops5g01352	956	PRINTS	H+-transporting ATPase (proton pump) signature	621	646	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Rops5g01352	956	PRINTS	H+-transporting ATPase (proton pump) signature	766	787	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops5g01352	Rops-Chr5	28202731	28211226	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops5g01352	1	956	Primary Pumps ATPases	AT5G62670	89.435	0.0	1735

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops5g01352	K01535		-	gmx:100805218	1731.46

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops5g01352	5	28202731	28211226	Rops5g01352	5	28202731	28211226	ECH

Showing 1 to 1 of 1 entries