Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01346 ATGACAATCAAAGGAGGAACCAACAAGGCTTGTGCAGCATGCAAATACCAAAGAAGAAAATGCTCAAAGGATTGCCCTTTAGCTCCATATTTCCCTGCAGATAAACCAAAAACTTTCAGCAATGCTCACCGTTTGTTTGGTGTGTGCAACATAATGAGAATATTGAAGCAGGTAAAGCCAGATGAAAGAGATGAAGCCATGAAATCTATCATTTTTGAGTCTGACATGCGTGCAAAATACCCAGATGTTGGATGCTATGGCGTTATGATGCGGTACCAAGATCTCTTATATGAATCCTTGGAAGAATTACGATATATACAAAAGCTAATTGCTTCTTGTAAGGAAATTCTGAATTCACAACATCTTGTTATGCCCGCATGTCCAATTGATGAATGTTCGATACCAGTATATAATTACGATAAATTTTCTTTATTTAATGGTAACGCTATTTGTGATGGTGATCCTTATAATGAAAGTAAGCATATTTTGCTTACATCACCATGTAGTAGTGGCATCACTAGCGTCTCTAATATCAATGGAGTCACTAAAATCAATGATATTAGTGTCTCTAATATCAATGGCCTCACTAATATCACTGATATTAGTGGCATCACTGGTAATAATGCCAGTGTCATAGATGTAAAACCTGATTTGAAGAGGGTGCAAACACTATCATATCATGAAGATGCTGTTAATGCCGGTGCCAATGTGATGGATGCAAAGTCTAACCTGATGTTAATGCAAGGATCATCATATGATGAAGAACTGAATTCTCCTGCTGACTTCACTAATTGTAATGGAAATTTTATGGATGGAAAAGATGCCAAATTTGATTTAATGAGAATGAAAGGACTATCTCCATGGTTGAGTGACATTGCTACAGCTAATGCTAGTGTCAATGCCAAAGATGCAAAATCTAATTTGATGTCAATGCAAGGATCATCCTATGATGAAGAACTGAATGCTCCTGCTGAACTCACTAATTCTAATGCAAATGTTATGGATGCAAAATGTGCAAAATTTGATTTGATGAAAGTGCAAGGACCATTCAATTACAATGGACGATATACTTTTCGATGA 1080 0.3639 MTIKGGTNKACAACKYQRRKCSKDCPLAPYFPADKPKTFSNAHRLFGVCNIMRILKQVKPDERDEAMKSIIFESDMRAKYPDVGCYGVMMRYQDLLYESLEELRYIQKLIASCKEILNSQHLVMPACPIDECSIPVYNYDKFSLFNGNAICDGDPYNESKHILLTSPCSSGITSVSNINGVTKINDISVSNINGLTNITDISGITGNNASVIDVKPDLKRVQTLSYHEDAVNAGANVMDAKSNLMLMQGSSYDEELNSPADFTNCNGNFMDGKDAKFDLMRMKGLSPWLSDIATANASVNAKDAKSNLMSMQGSSYDEELNAPAELTNSNANVMDAKCAKFDLMKVQGPFNYNGRYTFR* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01346 359 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 215 - -
Rops5g01346 359 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Rops5g01346 359 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01346 Rops-Chr5 28099865 28100944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01346 1 106 AS2 family AT3G47870 55.660 4.40e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops5g01346 LOB 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01346 - - lang:109346924 195.667