Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01341 ATGAAACCAGGTGACATGTTTGCTCCCATAGGAACCATAATTGCTTCCTTGATGTTTTTTTGGGCTATGTTTCAGCAATATTTCCCTTACCAACTTCGCAACCAAATTGAGAAATACTCTCAAAGATTGGTAATTTTAGTCTACCCTTACATCCAAATCACATTCCATGAGTTCACTGGGGAGAGACTCATGCGCAGTGAAGCTTATTCTGCCATAGAGAACTACCTCAGTTCCAAGGCATCAACACAAGCAAAGAGGCTCAAGGCTGACATAGCCAAGAATAATCAATCTCTTGTTCTTAGCATGGATGATCATGAAGAAGTAGCTGATGAGTTTAATGGAGTCAAACTTCGGTGGGAATCTGGTAAGCATATTTCAAAATCAAACTCACTTTCTTTCCACCCCATGACAGATGAAAAAAGATACTACAAGCTCATTTTCCACAAAGGTAATAGAGATATGATTTTAGGGACATACCTGAATTATGTCCTAAAAGAGGGTAAGGCAATTAAGGTGAAAAACAGACAAAGGAAGCTTTATACCAATAGTGGATCTTATTGGAGCCATGTAATGTTTGAGCATCCAGCAACATTTCAAACACTAGCTATGGATCCAGAGCAGAAGAAAATGATCATTGATGATCTTATCACATTCAGCAAAGCAGGAGAGTTCTATGCAAGAATTGGGAGGGCATGGAAGAGAGGGTATCTACTTCATGGACCTCCAGGAACTGGCAAGTCAACAATGATTGCTGCCATGGCAAACCTTTTAGGCTATGATCTGTATGATCTGGAATTGACTGCTGTGAAGGATAACACGGAATTGAGGAAGCTGCTGATAGAAACATCTAGCAAATCTATAATTGTGATTGAAGACATAGATTGTTCACTTGATCTGACTGGTCAGAGGAGGAAGACAAAGGAGAAAAAGGAAGAGGAAGAAGAGAAAGATCCAAGGCAAAAACAACAAGGAATGGAAGAAAGAAATATCAAAAGCAGTCAGGTAACTCTTTCTGGTCTTCTGAATTTCATTGATGGTTTATGGTCTGCTTGTGGTGGAGAAAGACTGATAGTCTTCACAACAAATTATGTGGAGAAACTGGATCCAGCATTGGTTAGAAAAGGAAGAATGGATAAGCACATAGAGTTGTCATATTGTGGCTTTGAGGCATTCAAATTGTTGGCTAAGAATTATCTTAATATTGAATCACACCATTTGTTTGGCACAATATGTGAATTGCTGAAGGAAACCAAAACCACCCCAGCTGATGTAGCTGAGATTTTGATGCCAAAAAATGCTTCTGGGGATGTACAAGCTGAAGTTTATCTGAAAAATTTGATTCAATCACTTGAATTGGAAAAAGAAGAAGCCAGGTTGAAATCTGAGGAAGATGCATCAGAAAGACTGATGCATCATCCAAGCAAGATTCTCATTGGACCGAATATGATTCATTAG 1455 0.3897 MKPGDMFAPIGTIIASLMFFWAMFQQYFPYQLRNQIEKYSQRLVILVYPYIQITFHEFTGERLMRSEAYSAIENYLSSKASTQAKRLKADIAKNNQSLVLSMDDHEEVADEFNGVKLRWESGKHISKSNSLSFHPMTDEKRYYKLIFHKGNRDMILGTYLNYVLKEGKAIKVKNRQRKLYTNSGSYWSHVMFEHPATFQTLAMDPEQKKMIIDDLITFSKAGEFYARIGRAWKRGYLLHGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKTKEKKEEEEEKDPRQKQQGMEERNIKSSQVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALVRKGRMDKHIELSYCGFEAFKLLAKNYLNIESHHLFGTICELLKETKTTPADVAEILMPKNASGDVQAEVYLKNLIQSLELEKEEARLKSEEDASERLMHHPSKILIGPNMIH* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01341 484 MobiDBLite consensus disorder prediction 303 329 - -
Rops5g01341 484 SMART AAA_5 232 387 IPR003593 GO:0016887
Rops5g01341 484 ProSitePatterns AAA-protein family signature. 355 373 IPR003960 GO:0005524|GO:0016887
Rops5g01341 484 MobiDBLite consensus disorder prediction 303 326 - -
Rops5g01341 484 CDD RecA-like_BCS1 211 383 - -
Rops5g01341 484 Gene3D - 382 453 - -
Rops5g01341 484 Pfam Domain associated at C-terminal with AAA 28 121 IPR025753 -
Rops5g01341 484 FunFam AAA-ATPase ASD, mitochondrial 188 381 - -
Rops5g01341 484 Gene3D - 188 381 IPR027417 -
Rops5g01341 484 PANTHER BCS1 AAA-TYPE ATPASE 11 455 - -
Rops5g01341 484 Pfam ATPase family associated with various cellular activities (AAA) 237 384 IPR003959 GO:0005524|GO:0016887
Rops5g01341 484 Coils Coil 443 472 - -
Rops5g01341 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 430 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01341 Rops-Chr5 27928263 27930116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01341 211 383 Calmodulin-binding Proteins AT3G56690 25.967 8.80e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01341 K08900 - jre:108992867 711.449