Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01308 ATGGTTGGGAACAAGAAGAAGAAGAAGAAGAATGGCTCTTTTAGGTCCATTTTCATGCATGCTGATGGCCTTGACTGGTTTCTCATGGTTTTGGGTTGTTTAGGGGCAGTTGGTGATGGCATAGGTACCCCTTTGGTGTTGTTTGTCACTAGCAAAATTATGAACGATATTGGTGGTTTTTCTAGTCCTACAAGCACCTCTTTCGTCCATAGCATCAACACGAATGCAGTGATGTTGTTATATATGGCTTGTGGCTCTTTTGTTGCTTGCTTCCTTGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGCAAGGTATTTAAAAGCAGTGCTCAGACAAGAAGTAGCATACTTTGATTTGCATGTCACAAGCACATCAGAGGTCATCACCAGTGTCTCTAATGACAGCCTTGTAATTCAAGATGCTCTTAGTGAAAAGGTTCCAAATTTTTTGATGAATGCATCCATGTTTATTGGGAGCTACATAGTGGCTTTTGCATTATTATGGAGATTGGCCATTGTGGGGTTCCCTTTTGTGGTTTTCCTTGTGATCCCTGGTTTTATGTATGGGAGGACTTTGATGGGGTTGGCTAGAAAGATCAGAGAAGAGTATAATCAAGCTGGTACAATAGCAGAACAAGCAATATCTTCCATCAGAACCGTTTATTCCTTTGTTGGGGAAAGCAAGACCATAGCTGCTTTCTCTGATGCTTTACAAGGATCAGTTAAGTTGGGGCTAAAACAAGGCTTAGCTAAAGGCTTAGCCATAGGAAGCAATGGTGTTGTTTTTGCTATATGGTCTTTCATGTCCTATTATGGTAGCAGAATGGTCATGTACCATGGTGCTAAAGGTGGAACTGTATTTGCAGTTGGAGCATCAATAGCTCTTGGTGGATTAGCTTTAGGTGCTGGATTATCCAATGTGAAGTACTTCTCAGAAGCAAGTATTGCAGGAGAACGTATAATGGAAGTGATAAAAAGAATTCCAAAGATTGATTCTGACAATATGGCTGGGGAGATTCTGGAGAATGTGTCAGGGGAAGTTGAATTTGACCATGTTGAATTTGTGTACCCATCAAGGCCAGACAGTGTTATCTTGAATGATTTTTGCCTAAAGATTCCAGCAGGTAAGACAGTGGCCTTAGTTGGAGGGAGTGGCTCAGGAAAATCAACAGTGATATCACTTTTGCAAAGATTTTATGACCCAATTGGGGGTGAGATATATCTTGATGGGGTGCCTATTCATAAGTTGCAACTCAAGTGGTTGAGGTCTCAAATGGGTTTGGTGAGTCAAGAGCCTGCATTGTTTGCAACTAGCATTAAGGAGAATATTTTCTTTGGAAGAGAGGATGCTACAGATGAAGAGGTTGTGGAAGCTGCCAAAGCTTCCAATGTTCATAATTTCATTTCACAATTACCACAAGGATATGATACTCAGGTTGGAGAGAGGGGAGTTCAAATGTCAGGTGGACAAAAACAAAGGATTGCTATAGCAAGAGCCATAATAAAAAGACCAAGAATCCTCTTACTAGATGAAGCAACAAGTGCACTTGATTCTGAATCAGAAAGAGTTGTTCAAGAAGCTTTAGACAAAGCTGCAGTTGGACGCACAACCATCATCATAGCTCACAGATTATCCACAATAAGAAACGCAGATGTCATTGCTGTCGTTCAAAATGGTAAGATCATGGAAATGGGGTCACACCACAACCTCATTCAAAACGACAATGGTCTTTACACTTCCCTAGTTCATCTCCAACAAACCAAAAATGAACAACAAAACGACACCACCCTCTCTCATAACAACACTCATCTTCACCCTTCATCTATTTCAAATATAGACAATGTTCAAAACACAAGTAGTCGTAGACTCTCACTTAATATAAGTCGTTCTAGCTCTTCAAACTCAATGGCACGTGATTCTTCTTCAATTCCAAATGCTGATGATGTTGTTGTTGTTGAAGATAATAAGAAGCTACCTGTTCCTTCATTTAGAAGGTTGTTGGCTATGAACATACCAGAGTGGAGACATGCATGTTTAGGGTGTTTGAATGCTGTGTTGTTTGGTGCAGTTCAACCTGTGTATGCATTTGCAATGGGGTCAGTGATATCTGTTTATTTTCTCAATGATCATGATGAGATCAAGAAGCAGATAAGGATCTATTCACTTTGTTTTCTGGGGTTGGCTTTGTTCTCTTTGGTGATTAATATACTTCAGCATTATAGCTTTGCTTACATGGGAGAGTACTTGACAAAAAGGGTCAGAGAAAGAATGCTTTCTAAGATACTTACTTTTGAGGTTGGATGGTTTGATCGTGATGAAAATTCCACAGGTGCTATTTGCTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGGTCTTTGGTGGGAGATAGAATGGCTCTAGTGGTACAAACTATCTCAGCAGTGGTAATAGCCTTTACCATGGGCCTGATAATTGCATGGAGGTTGGCCATTGTTATGATAGCAGTTCAACCCATTATCATAGTCTGCTTCTACATAAGACGTGTCCTTCTTAAGAGCATGTCAAGCATGGCCATAAAAGCCCAAGATGAAAGCAGCAAGATAGCTGCTGAAGCTGTTTCCAACCTTAGAACCATCACTGCCTTTTCTTCCCAAGACAGAATCCTCAAAATGCTTCAGAAAGCCCAAGAAGGCCCAAGCCATGAAAGCATTAGACAATCTTGGTTTGCAGGCATTGGGCTTGCATGTTCCCAAAGCCTAACATTTTGCACTTGGGCTTTGGACTTTTGGTATGGTGGTAAGCTTGTGTATCATGGGTATATCAATGCCAAAGCACTATTTGAGACCTTTATGATCTTGGTCAGCACAGGTAGGGTCATTGCTGATGCTGGTAGCATGACCAATGACCTTGCAAAAGGAGCAGATGCTGTGGGCTCAGTTTTTGCAATTCTTGATAGGTACACAAAAATTGAGCCTGATGATTTAGATGGGTACAAGCCTGAAAAGCTAACAGGGAAAATAGAACTCCATGATGTCCATTTTGCATACCCAGCTAGGCCTAATGTAATGATATTCCAAGGCTTCTCAATCAAAATTGATGCAGGCAAATCAACAGCATTGGTGGGACAAAGTGGTTCTGGCAAATCAACAATCATAGGCTTAATTGAGAGATTTTATGATCCACTTAAAGGGACAGTGGCCATAGATGATAGAGACATAAAATCATATCACCTTTGGTCACTAAGGAAACACATTGCACTAGTGAGCCAAGAGCCAACACTTTTTGGTGGGACCATAAAGGAGAACATTGCATATGGAGCATCTAATAAGGTTGATGAAAGTGAGATCATAGAGGCAGCAAGGGCTGCAAATGCTCATGATTTCATAGCAAGTTTGAAAGATGGTTATGACACATGGTGTGGTGATAGAGGAGTGCAACTATCTGGGGGTCAAAAGCAAAGGATTGCAATAGCTAGAGCCATATTGAAGAACCCTGAGGTGTTGCTTCTTGATGAAGCCACCAGTGCCCTTGATAGCCAATCAGAGAAATTGGTGCAAGATGCTCTAGAAAGGGTGATGGTGGGGAGGACTAGTGTGGTGGTAGCCCATAGGTTAAGCACCATACAAAACTGTGATCAAATTGCTGTGTTAGATAAAGGAAGGGTGGTGGAGAAAGGGACCCACTCTTCTTTGTTGGCTAAGGGACCAAGTGGAGCTTATTACTCATTGGTAAGTCTGCAAAGAAGACCAACCAACACTGTTGCTGACTCTGCAAATGAAATCAACTAA 3789 0.4133 MVGNKKKKKKNGSFRSIFMHADGLDWFLMVLGCLGAVGDGIGTPLVLFVTSKIMNDIGGFSSPTSTSFVHSINTNAVMLLYMACGSFVACFLEGYCWTRTGERQAARMRARYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDALSEKVPNFLMNASMFIGSYIVAFALLWRLAIVGFPFVVFLVIPGFMYGRTLMGLARKIREEYNQAGTIAEQAISSIRTVYSFVGESKTIAAFSDALQGSVKLGLKQGLAKGLAIGSNGVVFAIWSFMSYYGSRMVMYHGAKGGTVFAVGASIALGGLALGAGLSNVKYFSEASIAGERIMEVIKRIPKIDSDNMAGEILENVSGEVEFDHVEFVYPSRPDSVILNDFCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIGGEIYLDGVPIHKLQLKWLRSQMGLVSQEPALFATSIKENIFFGREDATDEEVVEAAKASNVHNFISQLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKRPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQNGKIMEMGSHHNLIQNDNGLYTSLVHLQQTKNEQQNDTTLSHNNTHLHPSSISNIDNVQNTSSRRLSLNISRSSSSNSMARDSSSIPNADDVVVVEDNKKLPVPSFRRLLAMNIPEWRHACLGCLNAVLFGAVQPVYAFAMGSVISVYFLNDHDEIKKQIRIYSLCFLGLALFSLVINILQHYSFAYMGEYLTKRVRERMLSKILTFEVGWFDRDENSTGAICSRLAKEANVVRSLVGDRMALVVQTISAVVIAFTMGLIIAWRLAIVMIAVQPIIIVCFYIRRVLLKSMSSMAIKAQDESSKIAAEAVSNLRTITAFSSQDRILKMLQKAQEGPSHESIRQSWFAGIGLACSQSLTFCTWALDFWYGGKLVYHGYINAKALFETFMILVSTGRVIADAGSMTNDLAKGADAVGSVFAILDRYTKIEPDDLDGYKPEKLTGKIELHDVHFAYPARPNVMIFQGFSIKIDAGKSTALVGQSGSGKSTIIGLIERFYDPLKGTVAIDDRDIKSYHLWSLRKHIALVSQEPTLFGGTIKENIAYGASNKVDESEIIEAARAANAHDFIASLKDGYDTWCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDQIAVLDKGRVVEKGTHSSLLAKGPSGAYYSLVSLQRRPTNTVADSANEIN* 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01308 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 999 1247 IPR027417 -
Rops5g01308 1262 ProSitePatterns ABC transporters family signature. 493 507 IPR017871 GO:0005524|GO:0016887
Rops5g01308 1262 CDD ABC_MTABC3_MDL1_MDL2 1007 1247 - -
Rops5g01308 1262 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 691 972 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g01308 1262 CDD ABC_6TM_Pgp_ABCB1_D1_like 29 327 - -
Rops5g01308 1262 SUPERFAMILY ABC transporter transmembrane region 666 991 IPR036640 GO:0005524|GO:0016020
Rops5g01308 1262 Pfam ABC transporter 372 521 IPR003439 GO:0005524
Rops5g01308 1262 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 990 - -
Rops5g01308 1262 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524|GO:0016887
Rops5g01308 1262 Gene3D - 997 1256 IPR027417 -
Rops5g01308 1262 FunFam ABC transporter B family member 4 997 1253 - -
Rops5g01308 1262 SMART AAA_5 381 567 IPR003593 GO:0016887
Rops5g01308 1262 SMART AAA_5 1034 1227 IPR003593 GO:0016887
Rops5g01308 1262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 354 590 IPR003439 GO:0005524
Rops5g01308 1262 Pfam ABC transporter 1026 1175 IPR003439 GO:0005524
Rops5g01308 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 592 IPR027417 -
Rops5g01308 1262 Gene3D - 352 610 IPR027417 -
Rops5g01308 1262 SUPERFAMILY ABC transporter transmembrane region 16 338 IPR036640 GO:0005524|GO:0016020
Rops5g01308 1262 MobiDBLite consensus disorder prediction 597 619 - -
Rops5g01308 1262 FunFam Putative ABC transporter B family member 8 650 995 - -
Rops5g01308 1262 Gene3D ABC transporter type 1, transmembrane domain 78 981 IPR036640 GO:0005524|GO:0016020
Rops5g01308 1262 CDD ABC_MTABC3_MDL1_MDL2 354 592 - -
Rops5g01308 1262 PANTHER ABC TRANSPORTER B FAMILY 4 734 IPR039421 -
Rops5g01308 1262 FunFam ABC transporter B family member 1 16 353 - -
Rops5g01308 1262 Pfam ABC transporter transmembrane region 686 954 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g01308 1262 Pfam ABC transporter transmembrane region 30 296 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g01308 1262 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 30 319 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g01308 1262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1007 1244 IPR003439 GO:0005524
Rops5g01308 1262 FunFam ABC transporter B family member 4 344 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01308 Rops-Chr5 27415964 27424315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01308 651 1260 Calmodulin-binding Proteins AT2G36910 36.748 6.04e-115 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01308 K05658 - gmx:100807709 2081.6