Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01307 ATGCCGCCGCCTCCAATGGTTAAACTTGGTGGTTCATCAGATAGAACAGTACCCTGGATGAAGAGGGCAGGGGCTTCTCAATTCAAACGCACCTTTGGTTCCTCACGTGTTGATCCTTATGAAGGAGCAACTACCAATGATGCCTTATCCTATGTGATGGAAGTGAAAGACATGTTTAAGGATCAAAGAGAAAAATATGACATGTTCCTTGAGATCTTGAAAGATTACAGGGCTCGAAGGATTGACACATTTGGTGTCATAGCAAGGGTGAAGGAGCTATTCAAAGGCCACAACAATTTGATTTTGGGATTCAACACTTTCTTGCCTAAGGGATATGAGATAACACTTGAAGATGAGACTTCTACAGAGAAAGCTATTGGTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTGCAAATCATTCTTGGACATTTTGAATATGTACCGCAAAGAGCATAAGGACATTGGTAAAGTTTACAACAAGGTTGCTACCATTTTTAAGGACCATCCAGATTTGCTTGAGGAATTCACTAGATTCTTACCAGATGTTTCTGCAGCACCTTCTACACAGCATGCTCCAGATGGATCAATGTTTTTAGATGTCCTGTTTGCTATTTCTTTAATTTATTTTTAG 648 0.3951 MPPPPMVKLGGSSDRTVPWMKRAGASQFKRTFGSSRVDPYEGATTNDALSYVMEVKDMFKDQREKYDMFLEILKDYRARRIDTFGVIARVKELFKGHNNLILGFNTFLPKGYEITLEDETSTEKAIGFVNKIKKRFQSDEHVCKSFLDILNMYRKEHKDIGKVYNKVATIFKDHPDLLEEFTRFLPDVSAAPSTQHAPDGSMFLDVLFAISLIYF* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01307 215 FunFam Paired amphipathic helix protein Sin3 47 109 - -
Rops5g01307 215 Gene3D Paired amphipathic helix 47 109 IPR036600 GO:0006355
Rops5g01307 215 ProSiteProfiles PAH domain profile. 118 188 IPR003822 GO:0006355
Rops5g01307 215 SUPERFAMILY PAH2 domain 117 187 IPR036600 GO:0006355
Rops5g01307 215 Gene3D Paired amphipathic helix 117 188 IPR036600 GO:0006355
Rops5g01307 215 ProSiteProfiles PAH domain profile. 41 111 IPR003822 GO:0006355
Rops5g01307 215 FunFam Paired amphipathic helix SIN3-like protein 117 188 - -
Rops5g01307 215 Pfam Paired amphipathic helix repeat 144 185 IPR003822 GO:0006355
Rops5g01307 215 Pfam Paired amphipathic helix repeat 64 108 IPR003822 GO:0006355
Rops5g01307 215 SUPERFAMILY PAH2 domain 41 110 IPR036600 GO:0006355
Rops5g01307 215 PANTHER SIN3B-RELATED 43 190 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01307 Rops-Chr5 27406011 27408877 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01307 42 137 WRKY Transcription Factor Family AT4G12020 51.042 2.36e-23 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops5g01307 PAH 2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01307 K11644 - gmx:100807181 264.618