Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01305 ATGGTTCGAATCAAGCGAAACCAAAGGCATTCGTTGGCACCCGAGATGCTAAGGATCGAAGACTTTTGGGATATGGAATAGATGACTACTGAACAAATCTCCCAGCCTGATAATGAACATCCATCACCTACTGTAAGTGGAACACCAATGGTAGTTGATGGCTCTATTGCAGGTGAATCACCTGAAATTCCTATCAATGTTCAGAATACCACAACTCCAAATGAAACTCAAAACCTGATTCCAAATGAAGTTGAGACTAGTTCCTCAACTTCAAGGCCAAATGTAATGGATAGCGATATTCATGGAAAAGGTCAAAACTGGAGGTCAAGCTTTGCTATGTATGTTAGTGAGCAATCTGCCAATATGAATATAAAGTTAGAGTTAGACCACTATTTGGAGGAACAAGTGTTACCTTACACAAATGAGTCTGCCTTTAGTAGTAGTGGCCGATTTATTACTCCACATCGCAACAAATTGCTCCCAGAAACATTAGAGGCATTAATGTGTACCCAAGATTGGCTATTGACTAACATGAAAGAGATCTATTCGACTTGTTTTCCAGCAAATTTTCCTGGGATGAAGAGGGCAAGGGATGATATTTATTCTGGTTCTGCTTCTCAATTCAAACGCCCCTTTGGTTCCTCACGTGGTGATTCCTATGGCCAAACCCCCCAAGTCCCTGGAGGGGGAGGGGGAGGGGGAGGTGGAGGAGGTGGTGTTGGCGGGGCAGGAGGTGGGGGAGCAACTACTTCCCAGAAACTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTGAAAGACATGTTTCAGGATCAAAGAGAAAAATATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAGCTATTTAAAGGGCACAACAATTTGATTTTTGGATTTAACACTTTCCTGCCTAAGGGATATGAGATAACACTTGATGAGGATGAGGCTTCTCCGAAGAAAACTGTTGAATTTGAAGAAGCTATTAGTTTTGTTAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTACCGCAAAGAGCATAAGGATATTGGTGAGGTTTACAGTGAGGTTGCTACCCTTTTTAAGGACCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCAACACCTTCTACACAGCATGCTCCATATGGTCGAAATTCATTGCAGCGCTTTAATGAGCGGAGCTCTATGACACCCATGATGCGGCAAATGCAAGTTGACAAGCAACGTTATCGACGAGACAGACTTCCTTCTCATGATCGTGATCTGAGTGTTGAACGCCCTGAGCTGGAAGATGACAAAACAATGATGAACATGCACAAGGAGCATAGGAAACGTGAGAGTAGGGATAGAAGAATTCGTGATCAGGATGAGAGAGAAGCTGATCTTGATAACGGCAGGGATTTGAACCCGCAACGCTTTCCTGACAAAAAGAAATCTGTCAAGAAGGCTGAAGGTTATGGGTTGGCTTCTGACTTTGCTTCATATGAGGACAAAGATACCTTAAAGAGCATGTACAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGCTGAGCAGTTCTGATGACTACCAAACATTCTTGAAGTGTCTTCATATTTTCAGCAGTGGAATAATAAAAAGGAATGATTTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATTCTGATCTTATGGATGAATTCAATGATTTCTTGGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTTATGAGTAAAAAGTCACTGGCTACTGATGGTCATTTATCAAGATCATCAAAGTTAGAGGACAGAGACAAAGAGCAGAAGTGTGACATGGATGGAGCTAAAGAGAAGGAAAGATGCAAGGAGAAATACTTGGGAAAGTCCATTCAAGAACTTGACCTTAGTAACTGTAAACGTTGTACTCCCAGCTACCGGCTTCTCCCCGCAGATTATCCAATTGCTACGGCTAGTCAGCGATCTGAGCTTGGTGCTCAAGTATTAAATGATCACTGGGTATCTGTGACTTCAGGCAGTGAGGATTACTCTTTCAAACATATGCGCCGGAATCAATATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCGGTGAGTTCAGCTGCTAAACGTGCAGAGGAATTGTATAACAACATTAATGAAAATAAGATCAGTGCGGAGTCTCTAAGCCGTCTTGAAGACCACTTCACTGTTCTAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGATGTCATAGACATACTGCGCAAAAACCCAACTCATGCTCTGCCTGTGATATTGACTCGATTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGTCGAACAGATTTCAATAAAGTTTGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTTGATCACCGTAGCTTCTATTTCAAGCAACAAGATTCCAAGAATTTGAGCACGAAATCTTTGGTGGCGGAGATTAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGATGACATTCTTCAGTCTATTGCTGCTGGAAATAAACAGCCTCTAATTCCACATCTTGAATTTGAATATTCAGATGCCGGGATTCATGAAGACCTGTATAAACTTGTTCGGTATTCATGTGAGGAGGTATTCTCAAGTAAAGAATTGTTAAATAAAATGATGAGGCTCTGGAGTACCTTCTTGGAGCCAATGCTCGGTGTTACTTCCCAATCTCATGGATCACAAAGGGTAGAGGACAGGAAAGCAGGGCATAATGTTCGCAATTTTGTTGCACAAAATGGAGGTGGTGACGGAAGCCCTCACGAAGACTCTATTTCAATCAATTCAAGGTTACCAAAATCTGACAAGAATGAAGTTGATGGTAGAGGAACTGAAGTGAAGAATGTTCACCGGAATAGTGTAGCAGCCAATGATAAAGAAAATGGATCTGTTGGTGGCGAACTTGTTAAAGATGATCTGTTAATGGATAAGGGGCAGAAAATTGTAGAATGCAGTGATAAAGCCTCTGGATTTAGTAAACAATTTTCCTCTGATGAACAAGGAGTTAAAAACAATGCATCTATTGCAATTAGAGGAGAAAACAGCCTGAACAGAAGCAACTTAGATGTGTCTCCAGGCCGTGTCCCTACTCCATCCCGACCAACTGATGGTGATGACTCTGTAGCCAAGTCACAGAGTGTTAATGTACCTTTGGTGGAGGGATGTGATGTTGCAGCTCCAGTACCAGTGGCCAACGGGGTACTAGTTGAGAACAATAAAGTTAAAAGCCACGAAGAATCTTCTGGGCCTTGCAAAATTGAAAAAGAAGAAGGTGAATTGTCACCAAATGGTGACTCTGAGGAAGATAACTTTGCTACCTATGGAGATTCAAATGTGCAGTCAATGGCTAAGTCAAAGCACAATATTGAAAGAAGAAAATATCAGTCTAGAAATGGAGAGGATGAATGCTGTCCAGAGGCTAGAGGTGATAATGATGCAGATGCTGATGACGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCTGGCAGTGAGTCTGCCGGTGACGAATGCTTCCGGGAAGATCATGAGGAGGAGGAAGATATAGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGGGAAGCTGAGGGGGGTGATGCACAAGCTGGAGGAGATGGCTTATCTTTGCCGTTGTCAGAGAGGTTCCTTTCATCTGTGAAACCTATCACAAAGCACGTATCAGCAGTTTCATTTGCTGAAGAAATGAAGGATTCAAGGGTGTTTTATGGGAATGATGATTTTTATGTGCTTTTTAGGCTTCATCAAATTTTGTATGAAAGGATCTTATCTGCAAAAACAAATTCAATGATTTCTGAAATGAAATGGAAAGCAAAAGATGCTAGTTCCCCTGATCCTTATTCAAGATTTATGAATGCGTTGTACAACTTGCTTGATGGATCTGCGGAGAATTCAAAGTTTGAAGATGAATGCCGAGCAATTATTGGGAACCAGTCTTATGTGTTATTCACATTGGACAAATTAATATACAAATTGGTCAGACAGCTTCAAACTGTTGCAACTGATGAGGTAGACAATAAGCTTCTTCAATTAAACGAGTATGAAAAGTCTCGGAAACCTGGGAAATTAAATGATTCAGTATATCATGCAAATGCACATGTCATCCTTCATGAGGAGAATATATATCGTTTGCAATGTTCTTCTACCCCCTCTCGACTATCCATCCAACTTATGGACAATATGAATGAAAAGCCTGAGTTGTTTGCCGTTTCTATTGATCCAAATTTTTCTTTTTATCTGCACAATGATTTTCTGTCTGTCTTTCCTGGCAAAAAGGAACCTCATGGCATTTTACTTCAAAGAAACAAACGCAAGTATGGAGACTCAGATGAGCTTTCTGCAATATACTCTGCCATGGAAGGTGTTAAAGTAATCAATGGATTGGAATGCAAGATAGCTTGCAACTCATCCAAGATTTCCTATGTGCTCGACACACAAGATTTTTTCTTCCGTCCAAGAAAGAAAAGAACATCATCAGCAACCACATCTTGCCGGTCTCGCAGGGACAGAGAAGAAAGATTCCGCAGATTGTTGGCATCCTCATAA 4749 0.41 MVRIKRNQRHSLAPEMLRIEDFWDME*MTTEQISQPDNEHPSPTVSGTPMVVDGSIAGESPEIPINVQNTTTPNETQNLIPNEVETSSSTSRPNVMDSDIHGKGQNWRSSFAMYVSEQSANMNIKLELDHYLEEQVLPYTNESAFSSSGRFITPHRNKLLPETLEALMCTQDWLLTNMKEIYSTCFPANFPGMKRARDDIYSGSASQFKRPFGSSRGDSYGQTPQVPGGGGGGGGGGGGVGGAGGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEASPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSATPSTQHAPYGRNSLQRFNERSSMTPMMRQMQVDKQRYRRDRLPSHDRDLSVERPELEDDKTMMNMHKEHRKRESRDRRIRDQDEREADLDNGRDLNPQRFPDKKKSVKKAEGYGLASDFASYEDKDTLKSMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSSGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLATDGHLSRSSKLEDRDKEQKCDMDGAKEKERCKEKYLGKSIQELDLSNCKRCTPSYRLLPADYPIATASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNINENKISAESLSRLEDHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRTDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDILQSIAAGNKQPLIPHLEFEYSDAGIHEDLYKLVRYSCEEVFSSKELLNKMMRLWSTFLEPMLGVTSQSHGSQRVEDRKAGHNVRNFVAQNGGGDGSPHEDSISINSRLPKSDKNEVDGRGTEVKNVHRNSVAANDKENGSVGGELVKDDLLMDKGQKIVECSDKASGFSKQFSSDEQGVKNNASIAIRGENSLNRSNLDVSPGRVPTPSRPTDGDDSVAKSQSVNVPLVEGCDVAAPVPVANGVLVENNKVKSHEESSGPCKIEKEEGELSPNGDSEEDNFATYGDSNVQSMAKSKHNIERRKYQSRNGEDECCPEARGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEHDDVDGKAESEGEAEGGDAQAGGDGLSLPLSERFLSSVKPITKHVSAVSFAEEMKDSRVFYGNDDFYVLFRLHQILYERILSAKTNSMISEMKWKAKDASSPDPYSRFMNALYNLLDGSAENSKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDEVDNKLLQLNEYEKSRKPGKLNDSVYHANAHVILHEENIYRLQCSSTPSRLSIQLMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPGKKEPHGILLQRNKRKYGDSDELSAIYSAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRKKRTSSATTSCRSRRDREERFRRLLASS* 1583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01305 1581 Pfam C-terminal domain of Sin3a protein 1302 1549 IPR031693 -
Rops5g01305 1581 Gene3D Paired amphipathic helix 257 319 IPR036600 GO:0006355
Rops5g01305 1581 MobiDBLite consensus disorder prediction 1067 1083 - -
Rops5g01305 1581 MobiDBLite consensus disorder prediction 965 1023 - -
Rops5g01305 1581 SUPERFAMILY PAH2 domain 332 404 IPR036600 GO:0006355
Rops5g01305 1581 MobiDBLite consensus disorder prediction 67 101 - -
Rops5g01305 1581 MobiDBLite consensus disorder prediction 404 514 - -
Rops5g01305 1581 MobiDBLite consensus disorder prediction 439 514 - -
Rops5g01305 1581 MobiDBLite consensus disorder prediction 1129 1150 - -
Rops5g01305 1581 ProSiteProfiles PAH domain profile. 251 321 IPR003822 GO:0006355
Rops5g01305 1581 MobiDBLite consensus disorder prediction 1175 1200 - -
Rops5g01305 1581 Coils Coil 741 768 - -
Rops5g01305 1581 Gene3D Paired amphipathic helix 533 606 IPR036600 GO:0006355
Rops5g01305 1581 MobiDBLite consensus disorder prediction 404 436 - -
Rops5g01305 1581 MobiDBLite consensus disorder prediction 1231 1246 - -
Rops5g01305 1581 MobiDBLite consensus disorder prediction 1129 1268 - -
Rops5g01305 1581 MobiDBLite consensus disorder prediction 67 95 - -
Rops5g01305 1581 PANTHER SIN3B-RELATED 250 1443 IPR039774 GO:0003714
Rops5g01305 1581 SUPERFAMILY PAH2 domain 538 604 IPR036600 GO:0006355
Rops5g01305 1581 ProSiteProfiles PAH domain profile. 535 604 IPR003822 GO:0006355
Rops5g01305 1581 SUPERFAMILY Ribonuclease H-like 79 173 IPR012337 -
Rops5g01305 1581 FunFam Paired amphipathic helix protein SIN3 532 606 - -
Rops5g01305 1581 Pfam Paired amphipathic helix repeat 358 402 IPR003822 GO:0006355
Rops5g01305 1581 Pfam Paired amphipathic helix repeat 557 601 IPR003822 GO:0006355
Rops5g01305 1581 Pfam Paired amphipathic helix repeat 274 318 IPR003822 GO:0006355
Rops5g01305 1581 MobiDBLite consensus disorder prediction 990 1004 - -
Rops5g01305 1581 Pfam Sin3 family co-repressor 670 762 IPR013194 -
Rops5g01305 1581 MobiDBLite consensus disorder prediction 210 249 - -
Rops5g01305 1581 Pfam hAT family C-terminal dimerisation region 138 173 IPR008906 GO:0046983
Rops5g01305 1581 ProSiteProfiles PAH domain profile. 335 405 IPR003822 GO:0006355
Rops5g01305 1581 MobiDBLite consensus disorder prediction 1156 1174 - -
Rops5g01305 1581 FunFam Paired amphipathic helix SIN3-like protein 334 405 - -
Rops5g01305 1581 SMART hdac_interact2seq4b 668 768 IPR013194 -
Rops5g01305 1581 MobiDBLite consensus disorder prediction 1201 1215 - -
Rops5g01305 1581 Gene3D Paired amphipathic helix 334 406 IPR036600 GO:0006355
Rops5g01305 1581 MobiDBLite consensus disorder prediction 1067 1101 - -
Rops5g01305 1581 SUPERFAMILY PAH2 domain 249 320 IPR036600 GO:0006355
Rops5g01305 1581 FunFam Paired amphipathic helix protein Sin3 257 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01305 Rops-Chr5 27374847 27394081 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01305 235 354 WRKY Transcription Factor Family AT4G12020 46.667 2.24e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops5g01305 Sin3a_C 1.3e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01305 K11644 - gmx:100807181 2304.63