Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01285 ATGGCTTCAGGTGGAACAGAAGCTTTTCCAGATTTGGGTAAACACTGCCAATATCAAGATTGCAACCAGCTTGATTTCCTTCCTTTCACCTGCGACGGTTGTAAACAGGTGTTGTGTGTGGAACATAGATCCTACAAGTCCCACGCGTGCCCAAAATCCGACCACAATAGCAGGAAAGTGGTTGTTTGTGAAACATGTTCCATGTCCATTGAGACAACCGGCTACGTGGGACAAGACGAGGAAGAGGCAATCTTGAAGAAGCACCACAACTCTGGGAACTGTGACCCCAACAAGAAGAAGAAACCCATTTGCCCTGTAAAGCGCTGCAAGGAGGTTTTAACGTTTTCTAATACAAGTACTTGTAAAACTTGTCATGTGAAGGTTTGCCTGAAGCACCGTTTCCCTGCTGATCATGCTTGTAACAGAGGAGGTTCCTTATCTTCTGCTAATGTTGTTGCTAATGGGAGGTGGAATAATAGGTTCTTGGCAGCTTTGGCTTCAAGGTATGGACAAGACTGTGCCAAGAGTGATAAACCTCGTACTAGTACAACATCTCCTCCTAGTACTCCCTCTGTTAAGGCTTATTGA 588 0.4524 MASGGTEAFPDLGKHCQYQDCNQLDFLPFTCDGCKQVLCVEHRSYKSHACPKSDHNSRKVVVCETCSMSIETTGYVGQDEEEAILKKHHNSGNCDPNKKKKPICPVKRCKEVLTFSNTSTCKTCHVKVCLKHRFPADHACNRGGSLSSANVVANGRWNNRFLAALASRYGQDCAKSDKPRTSTTSPPSTPSVKAY* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01285 195 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Rops5g01285 195 MobiDBLite consensus disorder prediction 176 195 - -
Rops5g01285 195 SUPERFAMILY AN1-like Zinc finger 9 59 IPR035896 -
Rops5g01285 195 MobiDBLite consensus disorder prediction 173 195 - -
Rops5g01285 195 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Rops5g01285 195 SMART AN1_Zf_4 104 145 IPR000058 GO:0008270
Rops5g01285 195 Gene3D - 2 67 IPR035896 -
Rops5g01285 195 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 187 - -
Rops5g01285 195 SUPERFAMILY AN1-like Zinc finger 96 148 IPR035896 -
Rops5g01285 195 ProSiteProfiles Zinc finger AN1-type profile. 98 148 IPR000058 GO:0008270
Rops5g01285 195 Gene3D - 79 154 IPR035896 -
Rops5g01285 195 FunFam AN1-type zinc finger protein 2B isoform X1 6 67 - -
Rops5g01285 195 Pfam AN1-like Zinc finger 104 141 IPR000058 GO:0008270
Rops5g01285 195 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01285 Rops-Chr5 27038488 27040306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01285 1 173 C2H2 Transcription Factor Family AT3G28210 64.571 5.50e-78 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01285 - - aprc:113867149 353.214