Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01282 ATGGAGATTCAACAACACTTGAAGCTCACTGTCCACAAGAACATACACAAGAAATGGGGTTCACACAAAGGTGCAAAAGAATCAGAGAAAATTTCAGAACCAAACAATACAACCACTCCAAGGCTGAAATGGAAGAAGATCTTCTTCCACACCATCATCCCTTCAAAACCCAACAAGAACCTTAATCCCCCCGAAGAATTCCTCTGCCCCATTTCACGTTCTCTCATGTCAGACCCTGTCATAGTCTCTTCGGGCCACTCCTTCGACAGAACCACCGTTGAAACATGTAAAAATCTCAACTTTACCCCTCAACTCCCAGATGGCACCACCCCAGATTTCTCAACCGTGATTCCAAACCTCGCCCTCAAAGCCTCCATTCTCAAATGGTGCCAAACCCAAACCACCATCCAAACCAACCCCACCAACATAGACAACCTCGTACGCACCTTAATCTCCTCGAAACCACCACAACAACAACATCAACCAAACCAAAACGTCGTCGTAGAAGTGACAAACAAAGAAAACCCACCTGAAAACAAGCTCCACCATGCAGAAACCAAAGTCCCTCTTCGACCAACACACATATATTCAACCTCCGAGGAATCCATAGCCACTGCCACGTCAGCAGCTTCAACCCCACCTCTTCAACTTTCAACTAGACCCAGTTGTTGTTACTCTTCTTCACCTTCTTCCTCTGAAATCGAACCTTCAACTTCACCAGAAGAAGAAGAAATCATAACCAAACTTCGAAACCCTCAAGTTTCGGTCATTGAAGAAGGTCTTGTTTCACTTAGAAAGTTAACAAGAACAAAAGAGGAAACAAGGGTTCAACTTTGCACCCCACGTTTACTCTCTTCCCTTCGTTCTCTCATTGTTTCCAAAAACGACAACGTTCAGGTGAATGCTCTTGCTTCATTGGTGAACCTTTCATTGGAGAAAACGAACAAGGTGAAGATTGTACGGTCAGGGATTGTTCCACCGTTGATTGAAGTGTTGAAGTTTGGATCCTCTGAGTCGCAGGAACATGCTTCCGGTGCACTCTTCAGTTTAGCACTTGACGATGATAACAAAACTGCCATTGGTGTTCTCGGTGCTTTGTTACCTTTACTTCAGGCGCTCCGGTCGGAGAGTGAGCGAACGCGCCATGACTCAGCTTTGGCTCTTTATCATTTGTCACTGATTCGGAGTAACCGGGGCAAGTTAGTTAAAATCGGGTCGGTTCCGGTTTTAGTGAGCATGGTTAAGTCGGGTCATATGACGGGTCGGGTTTTGATGATATTGGGTAATTTGGGTTCTGGGTCGGATGGTCGGGCTGCTATGTTGGATGCGGGTGTGGTGGAGTGTTTGAAGGATTTGTTGGAAGGGACCAAGTTGATATCTCGGTCGACTCGGGAGAGTTGTGTGGGTGTTATGTACTCACTGAGTCATGGTGGGTTGAGATTTAAGGCGGTTGCAAAGGTTGCGGGAGTGGTGGAAGTTTTACAAAAAGTGGAAAATATTGGGAGTGAAAGGGCTAAAGAAAAAATAAGAAGAATATTGGAGATGATGAGAGGAAAGGAAATGGAAGAGGAGGAAGTGGATTGGGAGGAATTACTTAACTCAGGGTTAGGTTGTCAAACTCCGAGTCGACTCGATAGTGGGTTGGATGAGTCAACTTCTAACTCGGTCAAGTTTTGA 1677 0.455 MEIQQHLKLTVHKNIHKKWGSHKGAKESEKISEPNNTTTPRLKWKKIFFHTIIPSKPNKNLNPPEEFLCPISRSLMSDPVIVSSGHSFDRTTVETCKNLNFTPQLPDGTTPDFSTVIPNLALKASILKWCQTQTTIQTNPTNIDNLVRTLISSKPPQQQHQPNQNVVVEVTNKENPPENKLHHAETKVPLRPTHIYSTSEESIATATSAASTPPLQLSTRPSCCYSSSPSSSEIEPSTSPEEEEIITKLRNPQVSVIEEGLVSLRKLTRTKEETRVQLCTPRLLSSLRSLIVSKNDNVQVNALASLVNLSLEKTNKVKIVRSGIVPPLIEVLKFGSSESQEHASGALFSLALDDDNKTAIGVLGALLPLLQALRSESERTRHDSALALYHLSLIRSNRGKLVKIGSVPVLVSMVKSGHMTGRVLMILGNLGSGSDGRAAMLDAGVVECLKDLLEGTKLISRSTRESCVGVMYSLSHGGLRFKAVAKVAGVVEVLQKVENIGSERAKEKIRRILEMMRGKEMEEEEVDWEELLNSGLGCQTPSRLDSGLDESTSNSVKF* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01282 558 MobiDBLite consensus disorder prediction 201 244 - -
Rops5g01282 558 SUPERFAMILY RING/U-box 58 133 - -
Rops5g01282 558 SUPERFAMILY ARM repeat 245 515 IPR016024 -
Rops5g01282 558 MobiDBLite consensus disorder prediction 18 37 - -
Rops5g01282 558 Pfam Armadillo/beta-catenin-like repeat 315 351 IPR000225 GO:0005515
Rops5g01282 558 Pfam U-box domain 64 133 IPR003613 GO:0004842|GO:0016567
Rops5g01282 558 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 360 IPR000225 GO:0005515
Rops5g01282 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 146 IPR013083 -
Rops5g01282 558 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 282 324 IPR000225 GO:0005515
Rops5g01282 558 FunFam RING-type E3 ubiquitin transferase 240 516 - -
Rops5g01282 558 SMART arm_5 353 393 IPR000225 GO:0005515
Rops5g01282 558 SMART arm_5 312 352 IPR000225 GO:0005515
Rops5g01282 558 SMART arm_5 271 311 IPR000225 GO:0005515
Rops5g01282 558 SMART arm_5 433 476 IPR000225 GO:0005515
Rops5g01282 558 PANTHER U BOX DOMAIN-CONTAINING 34 517 - -
Rops5g01282 558 MobiDBLite consensus disorder prediction 201 236 - -
Rops5g01282 558 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Rops5g01282 558 Gene3D - 238 515 IPR011989 -
Rops5g01282 558 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01282 Rops-Chr5 26951068 26953614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01282 64 558 U-box Gene Family AT5G40140 53.452 3.02e-166 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01282 - - lja:Lj2g3v1020040.1 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01282 5 26951068 26953614 Rops10g00624 10 15376175 15378320 ECH
Rops5g01282 5 26951068 26953614 Rops5g01282 5 26951068 26953614 ECH
Rops5g01282 5 26951068 26953614 Rops8g00769 8 15952105 15958998 PCT