Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01256 ATGTGGCCTAACGCGACCACTGTAGCCTCCGATTCTTCACCGTCTGAATTTATATGCAAAGATGGACGCAAGATTCGTGTTGGTGATTGTGCACTTTTCAAGCCACCCCATGACTCCCCTCCTTTTATTGGAATAATTCGCAAGTTAACATTTGATAAAGAAGAAAATCCAAGTTTAGAAGTTAATTGGCTTTACCGACCTGCTGATTTGAAGCTTGCTAAAGGGATTGTACTGGAAGCTGCACCGAACGAAGTCTTTTACTCCTTTCACAAGGATGTTACACCTGCTGCATCATTACTCCATCCTTGTAAAGTCGCATTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTAGACGAGTGTATGACATTGACAACAATTGTTTATGGTGGCTAACTGATAAGGACTACCGTAATGTACGACAGGAAGAAGTTAATCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGGCTGTGCCGTCAGGAGGCCGTTCTCCAAAACCTTTGAATGGTCCAACATCAACACAGTCATTGAAATCTGGTTCTGATAACGTTCAAAATAGTTCTTCCTTTGGTGTACAGGGTAAGGGAAAAAAGAGAGAACGTGGTGATCAGGGATCTGATTCATCTAAAAAAGAGCGATTATTGAAGGTAGAAGATGGAGATTCTGGTCAGTTTAGACCAGAGAGTATGTTAAAGTCTGAGATTGCTAAAATTACTGATAAAGGTGGGCTTGTGGACTTTGAAGGAGTCGAAAGACTGGTACAACTCATGCAACCCGATAGTGCTGATAAAAAAATGGATTTGGCTGGGCGAGTAATGCTTGTTGATGTCATAGCACTTACGGACCGGTATGACTGTCTTGGCTGGTTTGTACAGCTCAGGGGTTTGCCTGTGTTGGATGAGTGGCTGCAGGAGGTCCATAAGGGCAAAAATGGTGATGGTCATATGCCTAAAGAAAATGAAAAGTCTGTTGAAGAATTTTTGTTAGCCTTACTTCGTGCATTGGATAAGCTTCCTGTGAACCTTCATGCACTACAAACCTGTAATGTTGGAAAGTCTGTTAATAATTTACGCACCCACAAAAATTCTGAAATTCAGAGGAAAGCCAGGAGTTTAGTAGACACTTGGAAGAGACGTGTTGAAGCTGAAATGAATATGACTGATTCAAAATCTAGTTCCACCCGTTCTGTTTCTTGGCCAGCAAAGCCAGCAGCTTCTGAGGTTTCTCACCTTGGAAATAGGAAAACTGGAGGATCCTCTGAAAATGTGGCAAAGAGCTCTGCTGTTCAACCCTCAGTATCTAAAAATTCCCAAGCTAAGCTTAGTTCTGGAGACGCACTGTCCAAGTCCTCTTCATCTCCTGGCTCAACTAAATCAATGACTCCCTCAGTGGGTGGTAACTCAAAAGATCATAACATTAAAGTCATGGTTGGAACTGCAACGTCAGATCTGCCCCTGACACCTATCAAAGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAACAACAGCATATCTTGTTCTAGTGAACATGCAAAAACTATTGGTTCTTGTAGGGAAGATGCAAAGAGCTCCACGGCAGTATCAATGAGTGTGAGCAAAATTCCTGGTAGTGCATCTCGAACTCGGAAGTCGAGCAATGGTCTTCATGGAGCCGGTGTTGCTGTAGTTCAGAAGGAGCATGGCTCTGCAAAAAATTCATCTAGAAATTCACCATCTGAAAAAGTTTCACCAACTCAAGTGTCCCATGAGAAATCACCTGATCAGCCCCTAATCGATCAAGGGAGTAATCAGAGACTGATTCTCAGGTTACCAAACACTGGTCGCAGTCCTTCAAGGGGAGCTAGTGGGGGGTCTTTTGAAGAACCTGCTATTACCTGTGGTAAAGCATCACCTCCTGCTGACAAGAATGAGAATCAGGACAGAAGAGTTAAAGCTAAAACTGATAGTTTGCAGACCCTTAGTGTGTCAAATATGATAAATGATGCATGTGATGCTAATGAAACTTTGACTGTTTGTGACGAAGGTAAGGGCTCTCCAAGGGTTGATGAGCGGTGCAGGGCTAATGAAGATGGTGATAAAGTAGCAGAAACATCCAAACCAACTACCTCTTCATCTGGATTTATTTCCAGAACAGGGCAGACTTATGATGCTTCTTTAAGCCCCATGAATGCATTAGTTGAAAGCTGCGTGAAGTTTTCAGAAGCAAGTGCGTCTGTGTCCCCTGGAGATGATGGGATGAATCTACTAGCTTCTGTGGCTGCAGGGGAAATATCCAGATCTGAAAATGTCTCACCTCAGGCTTCACCTGAGAGGAAGTCTCCTGCGGCTGATGAATTGAGCTCAGGGAATGATTGCAAGTTAAAACATTCTGGTGAAGCAGTTGCTCGCACTCTTGGACATTCTGATACCGGAGAGCATCCTTTGAATGCCGTTGATCCATCGCAACTCAAAAATGATTCAAGGCATCCTGTTGCGACAATATCACGTGATATTTCAGATGGTGAAGCCATTTCATCGAGTTGTATAGAGAAAACTGGTGATGGCAGAACTCAAATAAATTTCTCTGCTACAGATTTGTCACAGAATGCGGAAGTTCCATGCCTACGGCCGGAAACCAAAGAAGATGCTTCTGAAACTATATTGCCAGCTAAAAAGGAGTCTCATGGGGAGCCTGGAGGAGCTGACCATTTTCAGGAACAGAGGGAATTAGGGAGTCAATGGGCTAAAAGCAGTGGTAGTTCAGACTCTAATTTAAAGCTACGGACTTCCTCTTTTGATGATGACCAGAAGATTGATCATGTAGATGGGGGAATCACAGAGAACGAGAAAATGTTGGTTTCTAAAGCTGTGGCAATTGAAAATGAACCTGGTGAAAAACCATCTGTGTTATCTTCAGATGTTGATAATGAGAACCAGATTAGTGCAGAGAAGGTGACAGGTATGGGTATATCAGTGAAAAAAGCCTCCCCAGTTGCAGAAAATTGTGAGTCCAAGGATTTAAAAAAGGAGGATGTTGCATCACCTGCTTCTGGTAATACTTTGACGGTATCGAAGGATGAAAATGATGACAACATGAAGCCAGTTAAGGTTGAGCCTGATGGAAAACGAATGGATCTGAGTTCAGCAGTTTCAGATGGTGGTAATGAATGTGCTGAGGAGAATTTGGGTAGAAAAGAGGTTCTTGGTCATAGTTCTGGCTCATTAGTTCACCCAGAGTTGCAAACAATTCCTGGGAAAGAGAAAGAAGTGTCCAAAACATGTGAATCTAACCTAGATGGAAATCAATCTGAGGTTGCAGGAGAGTGGGGTGCATGCAATGTTAATCCATCCCTTACTGCTGCTGGGTCAGATTCAGCAGTAAAACTGGACTTCGATTTGAACGAAGGCTTTCCTGTGGAGGATGTAAGCCAAGGGGAGATTGTTCGACAAGAAGAACCAATCACATCATCTGCAGTTCATGTCCCTTGCCCATTGCCTTTTCCCATTTCATCTGTCTCTGGTGGCTTCCATGCTTCAATTACAGTGGCGTCTGCTGCCAAAGGGCCGGTTGTTCCACCAGAAAACCCATTGCGGAGTAAGGGGGAACGATGGAAAGGGTCAGCTGCTACAAGTGCATTCCGGCCAGCTGAACCCAGGAAAAATGCTGAGACACCATCTAATACTAGTGAAGTTGCTTCTGTTGATGCCACTTCTATCAAACAAGGCCGCCCTCCTTTAGATTTTGATTTAAATGTGGCAGATGAAAGAAGTTTTGAGGAAATAGCTTCCCGTAGTTCTTTAGAATCTGGACCACATGATCGTGGCCCTGTGGGACTTGATCTTGATTTGAACAGACTGGATGAGACTCCGGAAGCTGGGTCTTTCTCTATGAGCAAACTGGATATTCCTTCTTTACCAAGTAAACCTTCATTGTCCAGTGGGTTATCTAATGGCGGAAGTGTCTCAAGAGACTTCGATTTAAATAATGGGCCAGGCCTTGATGAAGTTGGTACTGATGTCCCAGCACGTAGTCAGCAGATAAGAAGTACTGCACCATTTTCAACTGCTGTTCATGGCATGAGAACAAATAATGCTGAATTTGGGAATTATTCTTCATGGTTTCCTCCAGGCAATTCTTATTCTGCAATTACTGTGCCCCCACTTCTGCCTGGTAGAGGGGAGCAGAGTTACGTTGCTGGTGCTGGGGCGCAGCGGATCATAGGTCCCACAGGGAGCACACCTTTTGGTCCTGAAATCTACAGGGGGCCAGTGCTTTCATCCTCTCCAGCTGTTGCTTATCCACCTACCACACCCTTTCCATATCCAGGATTTCCATTTGAAACCAATTTTCCATTATCTTCAAACTCCTTTTCTGGTTGTTCAACAGCATTTATGGATTCATCAACTGTGGGCGGACTTTGCTTTCCTACCATGCCGTCACAACCAGTTGGTCCTGGTGGGGTTGTCTCATCCACTTATCCACGTCCCTATGTTATGAGTCTTCCAGGTGGTACAAGTAATGTGATTCCTGACAGCAGAAAATGGGGAAGTCAAAGTCTGGATCTTAATTCAGGCCCTGGTGGTACAGACACTGAGCGGAGAGATGATAGATTGCCTTCGGGATTGAGGCAAATGAACCTGATGGTGGCTGGGATGGAGCTGATAGATTCAGTTACAAACATCCCTCATGGCAGTAAGATCGTGGCTCTTCAAAGCAAGTTCTTAGGAGAAGCTTTTGTGGAAGTGTCAGAAAAATTGGGGATATTGTTAGTGTTGAGCGATGAACAAATGAGCAGAGATGAAGCTACCCTAGCTGCCGATGTGCCTCTTCGTTTCTAA 4842 0.4407 MWPNATTVASDSSPSEFICKDGRKIRVGDCALFKPPHDSPPFIGIIRKLTFDKEENPSLEVNWLYRPADLKLAKGIVLEAAPNEVFYSFHKDVTPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIDNNCLWWLTDKDYRNVRQEEVNQLLDKTKLEMHGAVPSGGRSPKPLNGPTSTQSLKSGSDNVQNSSSFGVQGKGKKRERGDQGSDSSKKERLLKVEDGDSGQFRPESMLKSEIAKITDKGGLVDFEGVERLVQLMQPDSADKKMDLAGRVMLVDVIALTDRYDCLGWFVQLRGLPVLDEWLQEVHKGKNGDGHMPKENEKSVEEFLLALLRALDKLPVNLHALQTCNVGKSVNNLRTHKNSEIQRKARSLVDTWKRRVEAEMNMTDSKSSSTRSVSWPAKPAASEVSHLGNRKTGGSSENVAKSSAVQPSVSKNSQAKLSSGDALSKSSSSPGSTKSMTPSVGGNSKDHNIKVMVGTATSDLPLTPIKEERSSSSSQSQNNSISCSSEHAKTIGSCREDAKSSTAVSMSVSKIPGSASRTRKSSNGLHGAGVAVVQKEHGSAKNSSRNSPSEKVSPTQVSHEKSPDQPLIDQGSNQRLILRLPNTGRSPSRGASGGSFEEPAITCGKASPPADKNENQDRRVKAKTDSLQTLSVSNMINDACDANETLTVCDEGKGSPRVDERCRANEDGDKVAETSKPTTSSSGFISRTGQTYDASLSPMNALVESCVKFSEASASVSPGDDGMNLLASVAAGEISRSENVSPQASPERKSPAADELSSGNDCKLKHSGEAVARTLGHSDTGEHPLNAVDPSQLKNDSRHPVATISRDISDGEAISSSCIEKTGDGRTQINFSATDLSQNAEVPCLRPETKEDASETILPAKKESHGEPGGADHFQEQRELGSQWAKSSGSSDSNLKLRTSSFDDDQKIDHVDGGITENEKMLVSKAVAIENEPGEKPSVLSSDVDNENQISAEKVTGMGISVKKASPVAENCESKDLKKEDVASPASGNTLTVSKDENDDNMKPVKVEPDGKRMDLSSAVSDGGNECAEENLGRKEVLGHSSGSLVHPELQTIPGKEKEVSKTCESNLDGNQSEVAGEWGACNVNPSLTAAGSDSAVKLDFDLNEGFPVEDVSQGEIVRQEEPITSSAVHVPCPLPFPISSVSGGFHASITVASAAKGPVVPPENPLRSKGERWKGSAATSAFRPAEPRKNAETPSNTSEVASVDATSIKQGRPPLDFDLNVADERSFEEIASRSSLESGPHDRGPVGLDLDLNRLDETPEAGSFSMSKLDIPSLPSKPSLSSGLSNGGSVSRDFDLNNGPGLDEVGTDVPARSQQIRSTAPFSTAVHGMRTNNAEFGNYSSWFPPGNSYSAITVPPLLPGRGEQSYVAGAGAQRIIGPTGSTPFGPEIYRGPVLSSSPAVAYPPTTPFPYPGFPFETNFPLSSNSFSGCSTAFMDSSTVGGLCFPTMPSQPVGPGGVVSSTYPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGGTDTERRDDRLPSGLRQMNLMVAGMELIDSVTNIPHGSKIVALQSKFLGEAFVEVSEKLGILLVLSDEQMSRDEATLAADVPLRF* 1614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01256 1613 MobiDBLite consensus disorder prediction 681 717 - -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 1222 1237 - -
Rops5g01256 1613 Pfam BAH domain 24 129 IPR001025 GO:0003682
Rops5g01256 1613 MobiDBLite consensus disorder prediction 568 621 - -
Rops5g01256 1613 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 255 391 IPR035441 -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 684 704 - -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 1511 1538 - -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 1511 1527 - -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 393 407 - -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 807 830 - -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 909 946 - -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 998 1058 - -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 1188 1346 - -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 911 928 - -
Rops5g01256 1613 SMART BAH_4 23 138 IPR001025 GO:0003682
Rops5g01256 1613 MobiDBLite consensus disorder prediction 1301 1325 - -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 390 657 - -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 767 794 - -
Rops5g01256 1613 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 292 401 IPR035441 -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 201 232 - -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 495 554 - -
Rops5g01256 1613 SMART TFS2_5 310 389 IPR003617 GO:0005634
Rops5g01256 1613 MobiDBLite consensus disorder prediction 929 946 - -
Rops5g01256 1613 Gene3D - 5 238 IPR043151 -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 157 233 - -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 173 200 - -
Rops5g01256 1613 ProSiteProfiles BAH domain profile. 23 138 IPR001025 GO:0003682
Rops5g01256 1613 Pfam TFIIS helical bundle-like domain 338 387 IPR017923 -
Rops5g01256 1613 CDD TFIIS_I 321 388 - -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 419 475 - -
Rops5g01256 1613 ProSiteProfiles TFIIS N-terminal domain profile. 311 390 IPR017923 -
Rops5g01256 1613 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 3 1549 - -
Rops5g01256 1613 MobiDBLite consensus disorder prediction 1027 1046 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01256 Rops-Chr5 26675611 26682502 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Rops5g01256 BAH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01256 - - gmx:112998769 2323.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01256 5 26675611 26682502 Rops10g00630 10 15527518 15534913 ECH
Rops5g01256 5 26675611 26682502 Rops5g01256 5 26675611 26682502 ECH