Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01252 ATGTCTCAAGGGTTCGCGATCGAGCTTTACATGGACCCTGCGTTGGAGAATCAGGTTCTGAAAGCATGGAACGTTCTTGCACGAAGACAAATCAGCACTGAGTTAATCGAAATGGAGTCACGCCCTCACATCACTCTGTTATCCACTCCCTTTCTAGAACCTTCCACCAAGCTCGAGAACCTTCTTAAGAACCTCTCCTCGAAACACGACCCTTTCCCTCTCTCTTTCTCTTCAATTGGTGCTTTCCCAAGTGATCAAAATGTCCTCTTTCTCTCTCCTACTCCTTCTCTCTCTCTCCTCCACTTTCAGTCACAGCTCTGTGACGCTATCAGGAAGGAAGGTATTGATGTTGGTGATGCGTACTCGCTCGGTAACTGGATACCGTATTGTTCGGTTGCTCATAATGTTCCGAAAGCGAGGATGGCAGAGGCTTTCTCTTTGTTGAGGGAACTGAAATTGCCGGTTACCGGTTATGCTGTTGATGTTGCACTGGTCCAGTTCTCTCCGGTTCGAGAACTCTTCTCCTTTGTGCTTGGAAACAACAACGCTGTAGATCAATGA 561 0.4742 MSQGFAIELYMDPALENQVLKAWNVLARRQISTELIEMESRPHITLLSTPFLEPSTKLENLLKNLSSKHDPFPLSFSSIGAFPSDQNVLFLSPTPSLSLLHFQSQLCDAIRKEGIDVGDAYSLGNWIPYCSVAHNVPKARMAEAFSLLRELKLPVTGYAVDVALVQFSPVRELFSFVLGNNNAVDQ* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01252 186 PANTHER - 1 182 - -
Rops5g01252 186 SUPERFAMILY LigT-like 5 146 IPR009097 -
Rops5g01252 186 Pfam 2'-5' RNA ligase superfamily 41 166 - -
Rops5g01252 186 Gene3D Cyclic phosphodiesterase 5 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01252 Rops-Chr5 26653098 26653896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01252 1 181 Calmodulin-binding Proteins AT5G40190 66.851 4.50e-84 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01252 - - gmx:100802388 281.567